private void convertIndividualProteinNode(XElement proteinNode)
{
var membraneLocation = EnumHelper.ParseValue <MembraneLocation>(proteinNode.GetAttribute("membraneLocation"));
var tissueLocation = EnumHelper.ParseValue <TissueLocation>(proteinNode.GetAttribute("tissueLocation"));
var intracellularVascularEndoLocation =
EnumHelper.ParseValue <IntracellularVascularEndoLocation>(proteinNode.GetAttribute("intracellularVascularEndoLocation"));
var localization = LocalizationConverter.ConvertToLocalization(tissueLocation, membraneLocation, intracellularVascularEndoLocation);
proteinNode.AddAttribute("localization", localization.ToString());
_converted = true;
}
private Localization retrieveLocalizationFrom(SnapshotExpressionProfile snapshot, SnapshotContext snapshotContext)
{
if (!snapshotContext.IsV9FormatOrEarlier)
{
return(ModelValueFor(snapshot.Localization));
}
//reset ot ensure we update all parameters
var intracellularVascularEndoLocation = ModelValueFor(snapshot.IntracellularVascularEndoLocation);
var tissueLocation = ModelValueFor(snapshot.TissueLocation);
var membraneLocation = ModelValueFor(snapshot.MembraneLocation);
return(LocalizationConverter.ConvertToLocalization(tissueLocation, membraneLocation, intracellularVascularEndoLocation));
}