private bool TryGetRetentionTimes(int fileId, string filePath, out LibraryRetentionTimes retentionTimes) { if (fileId < 0) { retentionTimes = null; return(false); } ILookup <Target, double?> timesLookup = _libraryEntries.ToLookup( entry => entry.Key.Target, entry => { FileData fileData; if (!entry.FileDatas.TryGetValue(fileId, out fileData)) { return(null); } return(fileData.ApexTime); }); var nonEmptyTimesDict = timesLookup .Where(grouping => grouping.Any(value => value.HasValue)) .ToDictionary(grouping => grouping.Key, grouping => Tuple.Create(TimeSource.peak, grouping.OfType <double>().ToArray())); retentionTimes = new LibraryRetentionTimes(filePath, nonEmptyTimesDict); return(true); }
public override bool TryGetRetentionTimes(MsDataFileUri filePath, out LibraryRetentionTimes retentionTimes) { int j = _librarySourceFiles.IndexOf(info => Equals(filePath.ToString(), info.FilePath)); if (j != -1) { var source = _librarySourceFiles[j]; ILookup <Target, double[]> timesLookup = _libraryEntries.ToLookup( entry => entry.Key.Target, entry => entry.RetentionTimesByFileId.GetTimes(source.Id)); var timesDict = timesLookup.ToDictionary( grouping => grouping.Key, grouping => { var array = grouping.SelectMany(values => values).ToArray(); Array.Sort(array); return(array); }); var nonEmptyTimesDict = timesDict .Where(kvp => kvp.Value.Length > 0) .ToDictionary(kvp => kvp.Key, kvp => new Tuple <TimeSource, double[]>(TimeSource.peak, kvp.Value)); retentionTimes = new LibraryRetentionTimes(filePath.ToString(), nonEmptyTimesDict); return(true); } return(base.TryGetRetentionTimes(filePath, out retentionTimes)); }
public override bool TryGetIrts(out LibraryRetentionTimes retentionTimes) { if (_libraryIrts == null || !_libraryIrts.Any()) { retentionTimes = null; return(false); } var irtDictionary = new Dictionary <Target, Tuple <TimeSource, double[]> >(); foreach (var irt in _libraryIrts) { if (!irtDictionary.ContainsKey(irt.Sequence)) { irtDictionary[irt.Sequence] = new Tuple <TimeSource, double[]>(irt.TimeSource, new [] { irt.Irt }); } } retentionTimes = new LibraryRetentionTimes(null, irtDictionary); return(true); }
public override bool TryGetIrts(out LibraryRetentionTimes retentionTimes) { retentionTimes = null; return(false); }
public override bool TryGetRetentionTimes(int fileIndex, out LibraryRetentionTimes retentionTimes) { retentionTimes = null; return(false); }
public override bool TryGetRetentionTimes(MsDataFileUri filePath, out LibraryRetentionTimes retentionTimes) { retentionTimes = null; return(false); }
/// <summary> /// Returns the times at which a peptide was found in a particular file. /// </summary> public double[] GetRetentionTimes(LibraryRetentionTimes retentionTimes, string sequence, ExplicitMods mods) { return (from typedSequence in GetTypedSequences(sequence, mods) from time in retentionTimes.GetRetentionTimes(typedSequence.ModifiedSequence) select time) .ToArray(); }
public override bool TryGetRetentionTimes(MsDataFileUri filePath, out LibraryRetentionTimes retentionTimes) { return(TryGetRetentionTimes(FindFileInList(filePath, _sourceFiles), filePath.ToString(), out retentionTimes)); }
public override bool TryGetRetentionTimes(int fileId, out LibraryRetentionTimes retentionTimes) { return(TryGetRetentionTimes(fileId, _sourceFiles[fileId], out retentionTimes)); }
public override bool TryGetRetentionTimes(int fileIndex, out LibraryRetentionTimes retentionTimes) { return(TryGetRetentionTimes(MsDataFileUri.Parse(_librarySourceFiles[fileIndex].FilePath), out retentionTimes)); }
public bool TryGetRetentionTimes(MsDataFileUri filePath, out LibraryRetentionTimes retentionTimes) { Assume.IsTrue(IsLoaded); foreach (Library lib in _libraries) { // Only one of the available libraries may claim ownership of the file // in question. if (lib != null && lib.TryGetRetentionTimes(filePath, out retentionTimes)) return true; } retentionTimes = null; return false; }
public override bool TryGetRetentionTimes(int fileIndex, out LibraryRetentionTimes retentionTimes) { retentionTimes = null; return false; }
public override bool TryGetRetentionTimes(MsDataFileUri filePath, out LibraryRetentionTimes retentionTimes) { retentionTimes = null; return false; }
public override bool TryGetIrts(out LibraryRetentionTimes retentionTimes) { retentionTimes = null; return false; }