internal static void ParseAndMapLaboratoryNumber(IsolateCommon source, IsolateCommon destination)
{
var decadeAndNumber = source.LaboratoryNumber.Split('/');
int.TryParse(decadeAndNumber[0], out var yearlySequentialIsolateNumber);
int.TryParse(decadeAndNumber[1], out var decade);
destination.Year = DateTime.Now.Year / 100 * 100 + decade;
destination.YearlySequentialIsolateNumber = yearlySequentialIsolateNumber;
}
private static void FillAntibiotic(IsolateCommon isolate, double?legacyMeasurement, DateTime receivingDate, Antibiotic antibiotic)
{
var db = Program.Context;
if (!legacyMeasurement.HasValue)
{
return;
}
var measurement = (float)legacyMeasurement.Value;
var minDate = db.EucastClinicalBreakpoints.OrderByDescending(e => e.ValidFrom).Where(e => e.Antibiotic == antibiotic && e.ValidFor == DatabaseType.Meningococci)
.Min(e => e.ValidFrom);
var eTestBreakPoint = db.EucastClinicalBreakpoints.OrderByDescending(e => e.ValidFrom)
.First(e => (e.ValidFrom <= receivingDate || e.ValidFrom == minDate) && e.Antibiotic == antibiotic && e.ValidFor == DatabaseType.Meningococci);
EpsilometerTestResult result;
if (measurement > eTestBreakPoint.MicBreakpointResistent)
{
result = EpsilometerTestResult.Resistant;
}
else if (measurement <= eTestBreakPoint.MicBreakpointSusceptible)
{
result = EpsilometerTestResult.Susceptible;
}
else
{
result = EpsilometerTestResult.Intermediate;
}
var eTest = new EpsilometerTest
{
EucastClinicalBreakpoint = eTestBreakPoint,
Measurement = measurement,
Result = result
};
isolate.EpsilometerTests.Add(eTest);
}