public IsIdentifiableHost(
[NotNull] GlobalOptions globals,
[NotNull] IsIdentifiableServiceOptions serviceOpts
)
: base(globals)
{
_consumerOptions = globals.IsIdentifiableOptions;
string classifierTypename = globals.IsIdentifiableOptions.ClassifierType;
string dataDirectory = globals.IsIdentifiableOptions.DataDirectory;
if (string.IsNullOrWhiteSpace(classifierTypename))
{
throw new ArgumentException("No IClassifier has been set in options. Enter a value for ClassifierType", nameof(globals));
}
if (string.IsNullOrWhiteSpace(dataDirectory))
{
throw new ArgumentException("A DataDirectory must be set", nameof(globals));
}
var objectFactory = new MicroserviceObjectFactory();
var classifier = objectFactory.CreateInstance <IClassifier>(classifierTypename, typeof(IClassifier).Assembly, new DirectoryInfo(dataDirectory), serviceOpts);
if (classifier == null)
{
throw new TypeLoadException($"Could not find IClassifier Type { classifierTypename }");
}
_producerModel = RabbitMqAdapter.SetupProducer(globals.IsIdentifiableOptions.IsIdentifiableProducerOptions, isBatch: false);
Consumer = new IsIdentifiableQueueConsumer(_producerModel, globals.FileSystemOptions.FileSystemRoot, globals.FileSystemOptions.ExtractRoot, classifier);
}
private static int OnParse(GlobalOptions globals, object parsedOpts)
{
var opts = SmiCliInit.Verify <IsIdentifiableAbstractOptions>(parsedOpts);
return(opts switch
{
IsIdentifiableRelationalDatabaseOptions o => Run(o),
IsIdentifiableDicomFileOptions o => Run(o),
IsIdentifiableMongoOptions o => Run(o),
IsIdentifiableServiceOptions o => Run(o),
IsIdentifiableFileOptions o => Run(o),
_ => throw new NotImplementedException($"No case for '{opts.GetType()}'")
});
//public TesseractStanfordDicomFileClassifier(DirectoryInfo dataDirectory) : base(dataDirectory)
public TesseractStanfordDicomFileClassifier(DirectoryInfo dataDirectory, IsIdentifiableServiceOptions isIdentifiableServiceOptions) : base(dataDirectory)
{
var fileOptions = new IsIdentifiableDicomFileOptions();
//need to pass this so that the runner doesn't get unhappy about there being no reports (even though we clear it below)
fileOptions.ColumnReport = true;
fileOptions.TessDirectory = dataDirectory.FullName;
fileOptions.IgnoreTextLessThan = isIdentifiableServiceOptions.IgnoreTextLessThan;
// The Rules directory is always called "IsIdentifiableRules"
DirectoryInfo[] subDirs = dataDirectory.GetDirectories("IsIdentifiableRules");
foreach (DirectoryInfo subDir in subDirs)
{
fileOptions.RulesDirectory = subDir.FullName;
}
_runner = new DicomFileRunner(fileOptions);
}
public RejectAllClassifier(DirectoryInfo dataDirectory, IsIdentifiableServiceOptions _) : base(dataDirectory)
{
}