public void AlignUsingPreviouslyProcessedOutputTest1()
{
var rawFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\Unlabelled\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.RAW";
var previouslyProcessedResultsFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\Unlabelled\AlignmentInfo\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18_iqAlignmentResults.txt";
WorkflowExecutorBaseParameters parameters = new BasicTargetedWorkflowExecutorParameters();
var run = new RunFactory().CreateRun(rawFile);
var massAndNetAligner = new IqMassAndNetAligner(parameters, run);
massAndNetAligner.LoadPreviousIqResults(previouslyProcessedResultsFile);
massAndNetAligner.ExecuteAlignment();
var baseFilenameForImageExport =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\Unlabelled\AlignmentInfo\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18";
massAndNetAligner.ExportGraphs(baseFilenameForImageExport);
}
public void DoAlignment()
{
if (Parameters.IsMassAlignmentPerformed)
{
Run.MassAlignmentInfo = IqMassAndNetAligner.DoMassAlignment();
}
if (Parameters.IsNetAlignmentPerformed)
{
Run.NetAlignmentInfo = IqMassAndNetAligner.DoNetAlignment();
}
if (Parameters.IsMassAlignmentPerformed || Parameters.IsMassAlignmentPerformed)
{
var exportedAlignmentIqResultsFilename = Path.Combine(_alignmentFolder, Run.DatasetName + "_iqAlignmentResults.txt");
IqMassAndNetAligner.ExportResults(exportedAlignmentIqResultsFilename);
var exportedGraphBaseFilename = Path.Combine(_alignmentFolder, Run.DatasetName);
IqMassAndNetAligner.ExportGraphs(exportedGraphBaseFilename);
}
}
