public void SetDefaultSettingsForTransporter(IndividualTransporter transporter, string species, string transporterName)
{
transporter.TransportType = _transporterContainerTemplateRepository.TransportTypeFor(species, transporterName);
foreach (var transporterContainer in transporter.AllExpressionsContainers())
{
//there is a db template
var tranporterTemplate = _transporterContainerTemplateRepository.TransportersFor(species, transporterContainer.Name, transporterName).FirstOrDefault();
if (tranporterTemplate != null)
{
transporterContainer.UpdatePropertiesFrom(tranporterTemplate);
}
else
{
UpdateTransporterFromTemplate(transporterContainer, species, MembraneLocationToUse(transporterContainer, transporter.TransportType), transporter.TransportType);
}
}
if (_transporterContainerTemplateRepository.HasTransporterTemplateFor(species, transporterName))
{
return;
}
//No template was found for the given name. Raise event warning
_eventPublisher.PublishEvent(new NoTranporterTemplateAvailableEvent(transporter));
}
public TransporterExpressionDTO MapFrom(IndividualTransporter transporter)
{
var transporterExpressionDTO = new TransporterExpressionDTO(transporter);
foreach (var transporterExpressionContainer in transporter.AllExpressionsContainers())
{
addContainerExpression(transporterExpressionDTO, transporter, transporterExpressionContainer);
}
return(transporterExpressionDTO);
}
public override void Execute(IExecutionContext context)
{
var transportContainerUpdater = context.Resolve <ITransportContainerUpdater>();
Add(new SetTransportTypeInTransporterCommand(_individualTransporter, NewTransportType, context));
//Check if a template is available for the given container. If yes, we're good to go and can create a change transporter type command
//we need to retrieve the process name for the given MembraneTupe/Process Type combo
foreach (var transporterContainer in _individualTransporter.AllExpressionsContainers())
{
var membraneLocationToUse = transportContainerUpdater.MembraneLocationToUse(transporterContainer, NewTransportType);
//change transport type
Add(new SetTransportTypeCommand(transporterContainer, OldTransportType, NewTransportType, membraneLocationToUse, context));
}
//now execute all commands
base.Execute(context);
//clear references
_individualTransporter = null;
_individual = null;
}
private TransporterExpressionContainer transporterContainerFrom(TransporterExpressionContainerDTO transporterExpressionContainerDTO)
{
return(_transporter.AllExpressionsContainers().FindByName(transporterExpressionContainerDTO.ContainerName));
}
private static void validateTransporterMembrane(IndividualTransporter transporter, MembraneLocation membraneLocation)
{
CoreConstants.Compartment.LiverZones.Each(z => transporter.AllExpressionsContainers().FindByName(z).MembraneLocation.ShouldBeEqualTo(membraneLocation));
}