protected override void Context()
{
_msvCreator = A.Fake <IMoleculeStartValuesCreator>();
A.CallTo(() => _msvCreator.CreateMoleculeStartValue(A <IObjectPath> .Ignored, A <string> .Ignored, A <IDimension> .Ignored, A <Unit> ._, A <ValueOrigin> ._))
.ReturnsLazily((IObjectPath path, string moleculeName, IDimension dimension) => new MoleculeStartValue {
ContainerPath = path, Name = moleculeName, Dimension = dimension
});
_concentrationDimension = new Dimension(new BaseDimensionRepresentation(), Constants.Dimension.MOLAR_CONCENTRATION, "mol/l");
_amountDimension = new Dimension(new BaseDimensionRepresentation(), Constants.Dimension.AMOUNT, "mol");
_amountDimension.AddUnit("mmol", 0.001, 0);
_timeDimension = new Dimension(new BaseDimensionRepresentation(), Constants.Dimension.TIME, "s");
_timeDimension.Unit("s").Factor = 1.0 / 60;
_dimensionFactory = A.Fake <IMoBiDimensionFactory>();
_startValuesBuildingBlock = A.Fake <IMoleculeStartValuesBuildingBlock>();
_reactionDimensionRetriever = A.Fake <IReactionDimensionRetriever>();
A.CallTo(() => _dimensionFactory.DimensionForUnit("mol")).Returns(_amountDimension);
A.CallTo(() => _dimensionFactory.DimensionForUnit("mmol")).Returns(_amountDimension);
A.CallTo(() => _dimensionFactory.DimensionForUnit("mol/l")).Returns(_concentrationDimension);
A.CallTo(() => _dimensionFactory.DimensionForUnit("s")).Returns(_timeDimension);
A.CallTo(() => _dimensionFactory.DimensionForUnit("")).Throws <Exception>();
A.CallTo(() => _dimensionFactory.Dimension(Constants.Dimension.AMOUNT)).Returns(_amountDimension);
A.CallTo(() => _dimensionFactory.Dimension(Constants.Dimension.MOLAR_CONCENTRATION)).Returns(_concentrationDimension);
A.CallTo(() => _reactionDimensionRetriever.SelectedDimensionMode).Returns(ReactionDimensionMode.AmountBased);
sut = new DataTableToImportQuantityDTOMapperForMolecules(_dimensionFactory, _reactionDimensionRetriever);
}
public IMoleculeStartValue MapFrom(ImportedQuantityDTO input)
{
var msv = _msvCreator.CreateMoleculeStartValue(input.ContainerPath, input.Name, input.Dimension, input.DisplayUnit);
msv.StartValue = input.QuantityInBaseUnit;
msv.DisplayUnit = input.DisplayUnit;
msv.IsPresent = input.IsPresent;
msv.NegativeValuesAllowed = input.NegativeValuesAllowed;
if (input.IsQuantitySpecified)
{
msv.StartValue = input.QuantityInBaseUnit;
}
if (input.IsScaleDivisorSpecified)
{
msv.ScaleDivisor = input.ScaleDivisor;
}
return(msv);
}
private IBuildConfiguration createBuildConfiguration()
{
var buildConfiguration = new BuildConfigurationForSpecs();
buildConfiguration.Molecules = getMolecules();
buildConfiguration.Reactions = getReactions();
buildConfiguration.SpatialStructure = getSpatialStructure();
buildConfiguration.PassiveTransports = new PassiveTransportBuildingBlock();
buildConfiguration.Observers = new ObserverBuildingBlock();
buildConfiguration.EventGroups = new EventGroupBuildingBlock();
buildConfiguration.SimulationSettings = createSimulationConfiguration();
buildConfiguration.MoleculeStartValues = _moleculeStartValuesCreator.CreateFrom(buildConfiguration.SpatialStructure, buildConfiguration.Molecules);
var objectPathForContainerThatDoesNotExist = _objectPathFactory.CreateObjectPathFrom("TOTO", "TATA");
buildConfiguration.MoleculeStartValues.Add(_moleculeStartValuesCreator.CreateMoleculeStartValue(objectPathForContainerThatDoesNotExist, "A", _concentrationDimension));
buildConfiguration.ParameterStartValues = _parameterStartValuesCreator.CreateFrom(buildConfiguration.SpatialStructure, buildConfiguration.Molecules);
setMoleculeStartValues(buildConfiguration.MoleculeStartValues);
return(buildConfiguration);
}