public SpeciesImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, IMoleculeBuilderFactory moleculeBuilderFactory, IMoleculeStartValuesCreator moleculeStartValuesCreator, IMoBiDimensionFactory moBiDimensionFactory, ASTHandler astHandler, IMoBiContext context)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_moleculeBuilderFactory = moleculeBuilderFactory;
_moleculeStartValuesCreator = moleculeStartValuesCreator;
_moBiDimensionFactory = moBiDimensionFactory;
_counter = 1;
_dimensionDictionary = new Dictionary <string, Dimension>();
}
public ConcentrationBaseModelHelperForSpecs(IObjectBaseFactory objectBaseFactory, IParameterStartValuesCreator parameterStartValuesCreator, IMoleculeStartValuesCreator moleculeStartValuesCreator,
IObjectPathFactory objectPathFactory, IDimensionFactory dimensionFactory, ISpatialStructureFactory spatialStructureFactory,
IOutputSchemaFactory outputSchemaFactory, IMoleculeBuilderFactory moleculeBuilderFactory,
IReactionDimensionRetriever reactionDimensionRetriever, IModelConstructor modelConstructor, ISolverSettingsFactory solverSettingsFactory)
{
_objectBaseFactory = objectBaseFactory;
_outputSchemaFactory = outputSchemaFactory;
_moleculeBuilderFactory = moleculeBuilderFactory;
_modelConstructor = modelConstructor;
_solverSettingsFactory = solverSettingsFactory;
_reactionDimensionRetriever = reactionDimensionRetriever.DowncastTo <ReactionDimensionRetrieverForSpecs>();
_spatialStructureFactory = spatialStructureFactory;
_parameterStartValuesCreator = parameterStartValuesCreator;
_moleculeStartValuesCreator = moleculeStartValuesCreator;
_objectPathFactory = objectPathFactory;
_concentrationDimension = dimensionFactory.Dimension(Constants.Dimension.MOLAR_CONCENTRATION);
_concentrationPerTimeDimension = dimensionFactory.Dimension(Constants.Dimension.MOLAR_CONCENTRATION_PER_TIME);
_volumeDimension = dimensionFactory.Dimension(Constants.Dimension.VOLUME);
}
public SimulationHelperForSpecs(IObjectBaseFactory objectBaseFactory, IParameterStartValuesCreator parameterStartValuesCreator, IMoleculeStartValuesCreator moleculeStartValuesCreator, IObjectPathFactory objectPathFactory, IDimensionFactory dimensionFactory, IModelConstructor modelConstructor, ISpatialStructureFactory spatialStructureFactory, INeighborhoodBuilderFactory neighborhoodFactory, IOutputSchemaFactory outputSchemaFactory, IMoleculeBuilderFactory moleculeBuilderFactory, ISolverSettingsFactory solverSettingsFactory)
: base(objectBaseFactory, parameterStartValuesCreator, moleculeStartValuesCreator, objectPathFactory,
dimensionFactory, spatialStructureFactory, neighborhoodFactory, outputSchemaFactory, moleculeBuilderFactory, solverSettingsFactory)
{
_modelConstructor = modelConstructor;
}
