public MoleculesAndReactionsCreator(IObjectBaseFactory objectBaseFactory,
IMoleculeBuilderFactory moleculeBuilderFactory,
IParameterIdUpdater parameterIdUpdater,
IProcessToProcessBuilderMapper processBuilderMapper,
IParameterSetUpdater parameterSetUpdater,
IIndividualEnzymeFactory individualEnzymeFactory,
IIndividualTransporterFactory individualTransporterFactory,
IModelContainerMoleculeRepository modelContainerMoleculeRepo,
IStaticReactionRepository staticReactionRepository,
IMoleculeCalculationRetriever moleculeCalculationRetriever,
IInteractionKineticUpdater interactionKineticUpdater,
IInteractionTask interactionTask
)
{
_objectBaseFactory = objectBaseFactory;
_moleculeBuilderFactory = moleculeBuilderFactory;
_parameterIdUpdater = parameterIdUpdater;
_processBuilderMapper = processBuilderMapper;
_parameterSetUpdater = parameterSetUpdater;
_individualEnzymeFactory = individualEnzymeFactory;
_individualTransporterFactory = individualTransporterFactory;
_modelContainerMoleculeRepo = modelContainerMoleculeRepo;
_staticReactionRepository = staticReactionRepository;
_moleculeCalculationRetriever = moleculeCalculationRetriever;
_interactionKineticUpdater = interactionKineticUpdater;
_interactionTask = interactionTask;
_allMoleculeNames = new List <string>();
_moleculeWithTurnoverReactions = new List <IMoleculeBuilder>();
}
public PKSimMoleculeStartValuesCreator(
IMoleculeStartValuesCreator moleculeStartValuesCreator,
IMoleculeStartFormulaRepository moleculeStartFormulaRepository,
IFormulaFactory formulaFactory,
IModelContainerMoleculeRepository modelContainerMoleculeRepository,
IEntityPathResolver entityPathResolver)
{
_moleculeStartValuesCreator = moleculeStartValuesCreator;
_moleculeStartFormulaRepository = moleculeStartFormulaRepository;
_formulaFactory = formulaFactory;
_modelContainerMoleculeRepository = modelContainerMoleculeRepository;
_entityPathResolver = entityPathResolver;
}
public PKSimMoleculeStartValuesCreator(IMoleculeStartValuesCreator moleculeStartValuesCreator,
IObjectPathFactory objectPathFactory,
IExpressionContainersRetriever expressionContainersRetriever,
IMoleculeStartFormulaRepository moleculeStartFormulaRepository,
IFormulaFactory formulaFactory,
IModelContainerMoleculeRepository modelContainerMoleculeRepository)
{
_moleculeStartValuesCreator = moleculeStartValuesCreator;
_objectPathFactory = objectPathFactory;
_expressionContainersRetriever = expressionContainersRetriever;
_moleculeStartFormulaRepository = moleculeStartFormulaRepository;
_formulaFactory = formulaFactory;
_modelContainerMoleculeRepository = modelContainerMoleculeRepository;
}
