private UpdateSimulationCommand(IMoBiSimulation simulationToUpdate, IModel newModel, IMoBiBuildConfiguration updatedBuildConfiguration, bool wasChanged,
string buildingBlockName, string changedBuildingBlockType)
{
_hasChanged = wasChanged;
_simulationToUpdate = simulationToUpdate;
_newModel = newModel;
_updatedBuildConfiguration = updatedBuildConfiguration;
_simulationId = _simulationToUpdate.Id;
_changedBuildingBlockName = buildingBlockName;
_changedBuildingBlockType = changedBuildingBlockType;
ObjectType = ObjectTypes.Simulation;
CommandType = AppConstants.Commands.UpdateCommand;
if (string.IsNullOrEmpty(_changedBuildingBlockName))
{
Description = AppConstants.Commands.ConfigureSimulationDescription(_simulationToUpdate.Name);
}
else
{
Description = AppConstants.Commands.UpdateCommandDescription(_simulationToUpdate.Name, _changedBuildingBlockName, _changedBuildingBlockType);
}
}
public override IMoleculeStartValuesBuildingBlock CreateStartValuesForSimulation(IMoBiBuildConfiguration buildConfiguration)
{
var simulationStartValues = _startValuesCreator.CreateFrom(buildConfiguration.SpatialStructureInfo.TemplateBuildingBlock, buildConfiguration.MoleculesInfo.TemplateBuildingBlock)
.WithName(buildConfiguration.MoleculeStartValuesInfo.TemplateBuildingBlock.Name);
var templateValues = UpdateValuesFromTemplate(simulationStartValues, buildConfiguration.MoleculeStartValuesInfo);
updateDefaultIsPresentToFalseForSpecificExtendedValues(simulationStartValues, templateValues);
return(simulationStartValues);
}
public UpdateSimulationCommand(IMoBiSimulation simulationToUpdate, IModel newModel, IMoBiBuildConfiguration updatedBuildConfiguration)
: this(simulationToUpdate, newModel, updatedBuildConfiguration, true, string.Empty, string.Empty)
{
}
public UpdateSimulationCommand(IMoBiSimulation simulationToUpdate, IModel newModel, IMoBiBuildConfiguration updatedBuildConfiguration, IBuildingBlock templateBuildingBlock)
: this(simulationToUpdate, newModel, updatedBuildConfiguration, true, templateBuildingBlock.Name, string.Empty)
{
_changedBuildingBlockType = new ObjectTypeResolver().TypeFor(templateBuildingBlock);
}
public override void RestoreExecutionData(IMoBiContext context)
{
_simulationToUpdate = context.Get <IMoBiSimulation>(_simulationId);
_newModel = context.Deserialize <IModel>(_modelSerialization);
_updatedBuildConfiguration = context.Deserialize <IMoBiBuildConfiguration>(_buildConfigurationSerialization);
}
protected override void ClearReferences()
{
_simulationToUpdate = null;
_newModel = null;
_updatedBuildConfiguration = null;
}
public void Edit(IMoBiSimulation simulation)
{
_buildConfiguration = simulation.MoBiBuildConfiguration;
Refresh();
}
public override IParameterStartValuesBuildingBlock CreateStartValuesForSimulation(IMoBiBuildConfiguration buildConfiguration)
{
var startValues = _startValuesCreator.CreateFrom(buildConfiguration.SpatialStructureInfo.TemplateBuildingBlock,
buildConfiguration.MoleculesInfo.TemplateBuildingBlock)
.WithName(buildConfiguration.ParameterStartValuesInfo.TemplateBuildingBlock.Name);
UpdateValuesFromTemplate(startValues, buildConfiguration.ParameterStartValuesInfo);
return(startValues);
}
public abstract TBuildingBlock CreateStartValuesForSimulation(IMoBiBuildConfiguration buildConfiguration);
public static IMoleculeStartValuesBuildingBlock CreateMoleculeStartValuesFor(IMoBiBuildConfiguration buildConfiguration)
{
var startValuesCreator = IoC.Resolve <IMoleculeStartValuesCreator>();
return(startValuesCreator.CreateFrom(buildConfiguration.MoBiSpatialStructure, buildConfiguration.Molecules));
}
private bool isInReaction(IParameter changedParameter, IMoBiBuildConfiguration buildConfiguration)
{
return(quantityIsIn <IReaction, IReactionBuilder>(changedParameter, buildConfiguration.Reactions));
}
private bool isInPassiveTransport(IParameter changedParameter, IMoBiBuildConfiguration buildConfiguration)
{
return(quantityIsIn <ITransport, ITransportBuilder>(changedParameter, buildConfiguration.PassiveTransports));
}
private bool isMoleculeStartValue(IQuantity changedQuantity, IMoBiBuildConfiguration buildConfiguration)
{
return(changedQuantity.IsAnImplementationOf <IMoleculeAmount>() ||
(changedQuantity.ParentContainer.IsAnImplementationOf <IMoleculeAmount>() && changedQuantity.IsNamed(Constants.Parameters.START_VALUE)));
}
private bool isInSimulationSettings(IParameter changedParameter, IMoBiBuildConfiguration buildConfiguration)
{
return(changedParameter.ParentContainer.IsAnImplementationOf <OutputInterval>());
}
private bool isObserver(IQuantity changedQuantity, IMoBiBuildConfiguration buildConfiguration)
{
return(changedQuantity.IsAnImplementationOf <IObserver>());
}
