public ChartFromTemplateService(IDimensionFactory dimensionFactory, IKeyPathMapper keyPathMapper, IDialogCreator dialogCreator, ICloneManager cloneManager, IChartUpdater chartUpdater)
{
_dimensionFactory = dimensionFactory;
_keyPathMapper = keyPathMapper;
_dialogCreator = dialogCreator;
_cloneManager = cloneManager;
_chartUpdater = chartUpdater;
}
public SimulationSettingsRetriever(IApplicationController applicationController, IProjectRetriever projectRetriever,
IEntityPathResolver entityPathResolver, IKeyPathMapper keyPathMapper, ICoreUserSettings userSettings)
{
_applicationController = applicationController;
_projectRetriever = projectRetriever;
_entityPathResolver = entityPathResolver;
_keyPathMapper = keyPathMapper;
_userSettings = userSettings;
}
protected override void Context()
{
_populationSimulationSettingsPresenter = A.Fake <IPopulationSimulationSettingsPresenter>();
_applicationController = A.Fake <IApplicationController>();
_projectRetriever = A.Fake <IPKSimProjectRetriever>();
_simulationPersistableUpdater = A.Fake <ISimulationPersistableUpdater>();
_project = A.Fake <PKSimProject>();
_compound1 = A.Fake <Compound>();
_individual = A.Fake <Individual>();
_human = new Species().WithName(CoreConstants.Species.HUMAN);
_rat = new Species().WithName(CoreConstants.Species.RAT);
_mouse = new Species().WithName(CoreConstants.Species.MOUSE);
A.CallTo(() => _individual.Species).Returns(_human);
_populationSimulation = A.Fake <PopulationSimulation>();
A.CallTo(() => _populationSimulation.Compounds).Returns(new[] { _compound1 });
A.CallTo(() => _populationSimulation.Individual).Returns(_individual);
_keyPathMapper = A.Fake <IKeyPathMapper>();
_entityPathResolver = A.Fake <IEntityPathResolver>();
_userSettings = A.Fake <ICoreUserSettings>();
_originalSettings = new OutputSelections();
A.CallTo(() => _populationSimulation.OutputSelections).Returns(_originalSettings);
_populationSimulation.Model = new Model();
_populationSimulation.Model.Root = new Container();
_compound1.Name = "DRUG";
var organism = new Organism();
var peripheralVenousBlood = new Container().WithName(CoreConstants.Organ.PeripheralVenousBlood);
var venousBlood = new Container().WithName(CoreConstants.Organ.VenousBlood);
var venousBloodPlasma = new Container().WithName(CoreConstants.Compartment.Plasma).WithParentContainer(venousBlood);
var drugPeripheralBlood = new Container().WithName(_compound1.Name);
var drugVenousBlood = new Container().WithName(_compound1.Name);
var periperhalVenousBloodObserver = new Observer {
Name = CoreConstants.Observer.PLASMA_PERIPHERAL_VENOUS_BLOOD
};
drugPeripheralBlood.Add(periperhalVenousBloodObserver);
var venousBloodObserver = new Observer {
Name = CoreConstants.Observer.CONCENTRATION
};
drugVenousBlood.Add(venousBloodObserver);
peripheralVenousBlood.Add(drugPeripheralBlood);
venousBloodPlasma.Add(drugVenousBlood);
organism.Add(peripheralVenousBlood);
organism.Add(venousBlood);
_populationSimulation.Model.Root.Add(organism);
A.CallTo(() => _projectRetriever.Current).Returns(_project);
A.CallTo(() => _applicationController.Start <ISimulationOutputSelectionPresenter <PopulationSimulation> >()).Returns(_populationSimulationSettingsPresenter);
sut = new SimulationSettingsRetriever(_applicationController, _projectRetriever, _entityPathResolver, _keyPathMapper, _userSettings, _simulationPersistableUpdater);
A.CallTo(() => _entityPathResolver.PathFor(periperhalVenousBloodObserver)).Returns("PERIPHERAL_OBSERVER");
A.CallTo(() => _entityPathResolver.PathFor(venousBloodObserver)).Returns("VENOUS_BLOOD_OBSERVER");
}
public SimulationRunner(IMoBiContext context, IMoBiApplicationController applicationController,
IOutputSelectionsRetriever outputSelectionsRetriever, ISimulationPersistableUpdater simulationPersistableUpdater,
IDisplayUnitUpdater displayUnitUpdater, ISimModelManagerFactory simModelManagerFactory, IKeyPathMapper keyPathMapper)
{
_context = context;
_applicationController = applicationController;
_outputSelectionsRetriever = outputSelectionsRetriever;
_simulationPersistableUpdater = simulationPersistableUpdater;
_displayUnitUpdater = displayUnitUpdater;
_simModelManagerFactory = simModelManagerFactory;
_keyPathMapper = keyPathMapper;
}
protected override void Context()
{
_context = A.Fake <IMoBiContext>();
_outputSelectionsRetriever = A.Fake <IOutputSelectionsRetriever>();
_simulationPersistableUpdater = A.Fake <ISimulationPersistableUpdater>();
_displayUnitUpdater = A.Fake <IDisplayUnitUpdater>();
_applicationController = A.Fake <IMoBiApplicationController>();
_simModelManagerFactory = A.Fake <ISimModelManagerFactory>();
_keyPathMapper = A.Fake <IKeyPathMapper>();
sut = new SimulationRunner(_context, _applicationController,
_outputSelectionsRetriever, _simulationPersistableUpdater, _displayUnitUpdater, _simModelManagerFactory, _keyPathMapper);
}
protected override void Context()
{
_dialogCreator = A.Fake <IDialogCreator>();
_templateTask = A.Fake <ITemplateTask>();
_keyPathMapper = A.Fake <IKeyPathMapper>();
_entitiesInContainerRetriever = A.Fake <IEntitiesInContainerRetriever>();
_entityTask = A.Fake <IEntityTask>();
_cloner = A.Fake <ICloner>();
_simulationAnalysisWorkflowMapper = A.Fake <IAnalysableToSimulationAnalysisWorkflowMapper>();
_simulationAnalysisCreator = A.Fake <ISimulationAnalysisCreator>();
_lazyLoadTask = A.Fake <ILazyLoadTask>();
sut = new PopulationAnalysisTemplateTask(_templateTask, _dialogCreator, _entitiesInContainerRetriever,
_keyPathMapper, _entityTask, _cloner, _simulationAnalysisWorkflowMapper, _simulationAnalysisCreator, _lazyLoadTask);
}
public PopulationAnalysisTemplateTask(ITemplateTask templateTask, IDialogCreator dialogCreator,
IEntitiesInContainerRetriever entitiesInContainerRetriever, IKeyPathMapper keyPathMapper,
IEntityTask entityTask, ICloner cloner, IAnalysableToSimulationAnalysisWorkflowMapper simulationAnalysisWorkflowMapper,
ISimulationAnalysisCreator simulationAnalysisCreator, ILazyLoadTask lazyLoadTask)
{
_templateTask = templateTask;
_dialogCreator = dialogCreator;
_entitiesInContainerRetriever = entitiesInContainerRetriever;
_keyPathMapper = keyPathMapper;
_entityTask = entityTask;
_cloner = cloner;
_simulationAnalysisWorkflowMapper = simulationAnalysisWorkflowMapper;
_simulationAnalysisCreator = simulationAnalysisCreator;
_lazyLoadTask = lazyLoadTask;
}
public SimulationSettingsRetriever(
IApplicationController applicationController,
IPKSimProjectRetriever projectRetriever,
IEntityPathResolver entityPathResolver,
IKeyPathMapper keyPathMapper,
ICoreUserSettings userSettings,
ISimulationPersistableUpdater simulationPersistableUpdater)
{
_applicationController = applicationController;
_projectRetriever = projectRetriever;
_entityPathResolver = entityPathResolver;
_keyPathMapper = keyPathMapper;
_userSettings = userSettings;
_simulationPersistableUpdater = simulationPersistableUpdater;
}
protected override void Context()
{
_dimensionFactory = A.Fake <IDimensionFactory>();
_keyPathMapper = new KeyPathMapper(new EntityPathResolverForSpecs(), new ObjectPathFactoryForSpecs());
_dialogCreator = A.Fake <IDialogCreator>();
_cloneManager = A.Fake <ICloneManager>();
_chartUpdater = A.Fake <IChartUpdater>();
sut = new ChartFromTemplateService(_dimensionFactory, _keyPathMapper, _dialogCreator, _cloneManager, _chartUpdater);
_chart = new CurveChart();
_dataColumns = new List <DataColumn>();
_template = new CurveChartTemplate();
_timeDimension = A.Fake <IDimension>();
_concentrationDimension = A.Fake <IDimension>();
_baseGrid = new BaseGrid("Time", _timeDimension);
_drugColumn = new DataColumn("Drug", _concentrationDimension, _baseGrid);
_drugTemplatePathArray = new[] { "Organism", "Liver", "Cells", "Drug", "Concentration" };
var drugPath = new List <string>(_drugTemplatePathArray);
drugPath.Insert(0, "Sim");
_drugColumn.QuantityInfo.Path = drugPath;
_drugColumn.QuantityInfo.Type = QuantityType.Drug | QuantityType.Observer;
_drugColumn.DataInfo.Origin = ColumnOrigins.Calculation;
_enzymeColumn = new DataColumn("Enzyme", _concentrationDimension, _baseGrid);
_enzymeTemplatePathArray = new[] { "Organism", "Liver", "Cells", "Enzyme", "Concentration" };
var enzymePath = new List <string>(_enzymeTemplatePathArray);
enzymePath.Insert(0, "Sim");
_enzymeColumn.QuantityInfo.Path = enzymePath;
_enzymeColumn.QuantityInfo.Type = QuantityType.Enzyme;
_enzymeColumn.DataInfo.Origin = ColumnOrigins.Calculation;
A.CallTo(() => _dimensionFactory.MergedDimensionFor(A <IWithDimension> ._))
.ReturnsLazily(x => x.GetArgument <IWithDimension>(0).Dimension);
//always available
_dataColumns.Add(_baseGrid);
_dataColumns.Add(_drugColumn);
_dataColumns.Add(_enzymeColumn);
}