public AbstractO18ProteinRatioRCalculatorPCA(IGetRatioIntensity intensityFunc, IO18QuantificationOption option)
{
this.intensityFunc = intensityFunc;
this.Option = option;
this.rExecute = ExternalProgramConfig.GetExternalProgram("R");
if (this.rExecute == null)
{
throw new Exception("Define R location first!");
}
}
public static double[][] ConvertToArray <T>(this IGetRatioIntensity func, IEnumerable <T> anns) where T : IAnnotation
{
var refs = new List <double>();
var samples = new List <double>();
foreach (IAnnotation ann in anns)
{
refs.Add(func.GetReferenceIntensity(ann));
samples.Add(func.GetSampleIntensity(ann));
}
var result = new double[2][];
result[0] = refs.ToArray();
result[1] = samples.ToArray();
return(result);
}
public O18ProteinRatioRPeptideCalculator(IGetRatioIntensity intensityFunc, IO18QuantificationOptions option)
: base(intensityFunc, option)
{
}
public O18ProteinRatioCalculator(IGetRatioIntensity intensityFunc)
{
this.intensityFunc = intensityFunc;
}
public AbstractO18QuantificationOptions()
{
this.func = new O18GetRatioIntensity();
this.calc = new O18ProteinRatioRPeptideCalculator(this.func, this);
}
public AbstractProteinRatioRPairCalculator(IGetRatioIntensity intensityFunc, IPairQuantificationOptions option)
{
this.intensityFunc = intensityFunc;
this.Option = option;
}
