public void DetermineStructuralVariantEffect(VariantType variantType, bool isAblation, bool isAmplification, bool isElongation,
bool isTruncation, bool isFivePrimeDuplicatedTranscript, bool isThreePrimeDuplicatedTranscript,
ConsequenceTag[] expectedResults)
{
IFeatureVariantEffects featureVariantEffects = GetFeatureVariantEffects(isAblation, isAmplification, isTruncation, isElongation,
isFivePrimeDuplicatedTranscript, isThreePrimeDuplicatedTranscript);
var variant = new Variant(null, 0, 0, null, null, variantType, null, false, false, false, null, AnnotationBehavior.StructuralVariants,
true);
var consequence = new Consequences(variantType, null, featureVariantEffects);
consequence.DetermineStructuralVariantEffect(variant);
ConsequenceTag[] observedResults = consequence.GetConsequences().ToArray();
Assert.Equal(expectedResults, observedResults);
}
public Consequences(IVariantEffect variantEffect = null, IFeatureVariantEffects featureEffect = null)
{
_consequences = new List <ConsequenceTag>();
_variantEffect = variantEffect;
_featureEffect = featureEffect;
}
