public void ReloadWithPKSimSettings()
{
var dataImporterSettings = new DataImporterSettings();
dataImporterSettings.AddNamingPatternMetaData(Constants.FILE, Constants.SHEET);
dataImporterSettings.AddNamingPatternMetaData(Constants.FILE, Constants.SHEET, "Species");
using (var serializationContext = SerializationTransaction.Create(_container))
{
var serializer = _modelingXmlSerializerRepository.SerializerFor <ImporterConfiguration>();
var fileName = _dialogCreator.AskForFileToOpen("Save configuration", "xml files (*.xml)|*.xml|All files (*.*)|*.*",
Constants.DirectoryKey.PROJECT);
if (fileName.IsNullOrEmpty())
{
return;
}
var xel = XElement.Load(fileName); // We have to correctly handle the case of cancellation
var configuration = serializer.Deserialize <ImporterConfiguration>(xel, serializationContext);
dataImporterSettings.NameOfMetaDataHoldingMoleculeInformation = "Molecule";
dataImporterSettings.NameOfMetaDataHoldingMolecularWeightInformation = "Molecular Weight";
_dialogCreator.MessageBoxInfo(_dataImporter.ImportFromConfiguration
(
configuration,
_dataImporter.DefaultMetaDataCategoriesForObservedData(),
_dataImporter.ColumnInfosForObservedData(),
dataImporterSettings,
_dialogCreator.AskForFileToOpen(Captions.Importer.OpenFile, Captions.Importer.ImportFileFilter, Constants.DirectoryKey.OBSERVED_DATA)
)?.Count() + " data sets successfully imported");
}
}
private (IReadOnlyList <MetaDataCategory>, DataImporterSettings) initializeSettings()
{
var dataImporterSettings = new DataImporterSettings
{
IconName = ApplicationIcons.MoBi.IconName,
Caption = $"{AppConstants.PRODUCT_NAME} - {AppConstants.Captions.ImportObservedData}",
CheckMolWeightAgainstMolecule = false
};
addNamingPatterns(dataImporterSettings);
dataImporterSettings.NameOfMetaDataHoldingMoleculeInformation = MOLECULE;
dataImporterSettings.NameOfMetaDataHoldingMolecularWeightInformation = MOLECULAR_WEIGHT;
var metaDataCategories = _dataImporter.DefaultMetaDataCategoriesForObservedData().ToList();
populateMetaDataLists(metaDataCategories);
return(metaDataCategories, dataImporterSettings);
}
private (IReadOnlyList <MetaDataCategory>, DataImporterSettings) initializeSettings(Compound compound = null, bool allowCompoundNameEdit = false)
{
var dataImporterSettings = new DataImporterSettings
{
Caption = $"{CoreConstants.ProductDisplayName} - {PKSimConstants.UI.ImportObservedData}",
IconName = ApplicationIcons.ObservedData.IconName,
// CheckMolWeightAgainstMolecule = true
};
addNamingPatterns(dataImporterSettings);
dataImporterSettings.NameOfMetaDataHoldingMoleculeInformation = Constants.ObservedData.MOLECULE;
dataImporterSettings.NameOfMetaDataHoldingMolecularWeightInformation = Constants.ObservedData.MOLECULAR_WEIGHT;
var metaDataCategories = _dataImporter.DefaultMetaDataCategoriesForObservedData().ToList();
populateMetaDataLists(metaDataCategories, compound, allowCompoundNameEdit);
return(metaDataCategories, dataImporterSettings);
}
public DataImporterTask(
IDataImporter dataImporter,
ICsvDynamicSeparatorSelector csvSeparatorSelector,
IDimensionFactory dimensionFactory,
IPKMLPersistor pkmlPersistor
)
{
_dataImporter = dataImporter;
_dimensionFactory = dimensionFactory;
_pkmlPersistor = pkmlPersistor;
_metaDataCategories = _dataImporter.DefaultMetaDataCategoriesForObservedData();
_dataImporterSettings = new DataImporterSettings
{
NameOfMetaDataHoldingMoleculeInformation = Constants.ObservedData.MOLECULE,
NameOfMetaDataHoldingMolecularWeightInformation = Constants.ObservedData.MOLECULAR_WEIGHT,
IgnoreSheetNamesAtImport = true
};
_columnInfos = _dataImporter.ColumnInfosForObservedData();
_columnInfoCache = new ColumnInfoCache(_columnInfos);
_csvSeparatorSelector = csvSeparatorSelector;
}