public object Get(IFormatReader parameter)
{
var elementType = _classification.GetClassification(parameter, _declaredType).GetElementType();
var result = _reader.Get(parameter).ToArray(elementType ?? throw new InvalidOperationException("Element type not found."));
return(result);
}
/**
* 根据calculationItems中保存信息，计算在各个classifiedName中每个Object对应的肽段数量。
*/
private void CalculatePeptideCount()
{
foreach (CalculationItem item in calculationItems)
{
item.ClassifyPeptideHit((m => sphc.GetClassification(m)), option.GetClassifiedNames());
}
CalculatePeptideCountDistribution();
}
public object Get(T parameter)
{
using (var content = _readers.Get(parameter))
{
var classification = _classification.GetClassification(content);
var result = _serializers.Get(classification)
.Get(content);
return(result);
}
}
ReferenceIdentity?GetReference(IFormatReader parameter)
{
var identity = ReferenceIdentity.Get(parameter);
if (identity.HasValue)
{
return(new ReferenceIdentity(identity.Value));
}
var type = _classification.GetClassification(parameter, _definition);
var entity = _entities.Get(type)?.Reference(parameter);
if (entity != null)
{
return(new ReferenceIdentity(type, entity));
}
return(null);
}
ReferenceIdentity?GetReference(IFormatReader parameter)
{
if (parameter.Get().To <XmlReader>().NodeType != XmlNodeType.Attribute ||
MemberProperty.Default.Get(parameter))
{
var identity = ReferenceIdentity.Get(parameter);
if (identity.HasValue)
{
return(new ReferenceIdentity(identity.Value));
}
var type = _classification.GetClassification(parameter, _definition);
var entity = _entities.Get(type)?.Reference(parameter);
if (entity != null)
{
return(new ReferenceIdentity(type, entity));
}
}
return(null);
}
private List <int> GetPepCount(IClassification <IIdentifiedPeptide> classification, IEnumerable <IIdentifiedPeptide> curPeps)
{
var result = new List <int>();
var pepGroup = curPeps.GroupBy(m => classification.GetClassification(m));
foreach (var key in ClassificationSet.Keys)
{
int count = 0;
foreach (var en in pepGroup)
{
if (en.Key == key)
{
count = en.Count();
break;
}
}
result.Add(count);
}
return(result);
}
