protected override Task Context()
{
_parameterMapper = A.Fake <ParameterMapper>();
_advancedParameterFactory = A.Fake <IAdvancedParameterFactory>();
_logger = A.Fake <ILogger>();
_advancedParameter = new AdvancedParameter
{
DistributedParameter = DomainHelperForSpecs.NormalDistributedParameter(10, 5),
ParameterPath = "ParameterPath",
Name = "ParameterName"
};
_originalSeed = _advancedParameter.Seed;
sut = new AdvancedParameterMapper(_parameterMapper, _advancedParameterFactory, _entityPathResolver, _logger);
_meanSnapshot = new Parameter
{
Name = _advancedParameter.DistributedParameter.MeanParameter.Name,
};
_deviationSnapshot = new Parameter
{
Name = _advancedParameter.DistributedParameter.DeviationParameter.Name,
};
A.CallTo(() => _parameterMapper.MapToSnapshot(_advancedParameter.DistributedParameter.MeanParameter)).Returns(_meanSnapshot);
A.CallTo(() => _parameterMapper.MapToSnapshot(_advancedParameter.DistributedParameter.DeviationParameter)).Returns(_deviationSnapshot);
return(Task.FromResult(true));
}
protected override Task Context()
{
_containerTask = A.Fake <IContainerTask>();
_progressManager = A.Fake <IProgressManager>();
_individualCacheImporter = A.Fake <IIndividualPropertiesCacheImporter>();
_cloner = A.Fake <ICloner>();
_objectBaseFactory = A.Fake <IObjectBaseFactory>();
_advancedParameterFactory = A.Fake <IAdvancedParameterFactory>();
_createdPopulation = A.Fake <ImportPopulation>();
_individual = new Individual();
_cloneIndividual = new Individual();
A.CallTo(() => _cloner.Clone(_individual)).Returns(_cloneIndividual);
A.CallTo(() => _objectBaseFactory.Create <ImportPopulation>()).Returns(_createdPopulation);
A.CallTo(() => _createdPopulation.IndividualPropertiesCache).Returns(A.Fake <IndividualPropertiesCache>());
sut = new ImportPopulationFactory(_objectBaseFactory, _progressManager, _individualCacheImporter, _cloner, _containerTask, _advancedParameterFactory);
A.CallTo(() => _containerTask.CacheAllChildren <IParameter>(_cloneIndividual)).Returns(_allParameters);
A.CallTo(() => _containerTask.CacheAllChildrenSatisfying(_cloneIndividual, A <Func <IParameter, bool> > ._)).Returns(_allCreateIndividualParameters);
_popFile1 = A.Fake <IndividualPropertiesCache>();
_popFile2 = A.Fake <IndividualPropertiesCache>();
A.CallTo(() => _individualCacheImporter.ImportFrom(_file1, _allParameters, A <IImportLogger> ._)).Returns(_popFile1);
A.CallTo(() => _individualCacheImporter.ImportFrom(_file2, _allParameters, A <IImportLogger> ._)).Returns(_popFile2);
return(_completed);
}
protected override void Context()
{
_moleculeParameterFactory = A.Fake <IMoleculeParameterRepository>();
_advancedParmeterFactory = A.Fake <IAdvancedParameterFactory>();
_advancedParametersTask = A.Fake <IAdvancedParametersTask>();
_executionContext = A.Fake <IExecutionContext>();
sut = new MoleculeParameterVariabilityCreator(_advancedParmeterFactory, _moleculeParameterFactory, _advancedParametersTask, _executionContext);
_randomPopulation = new RandomPopulation {
Settings = new RandomPopulationSettings()
};
_randomPopulation.SetAdvancedParameters(new AdvancedParameterCollection());
var individual = A.Fake <Individual>();
_molecule1 = DomainHelperForSpecs.DefaultIndividualMolecule().WithName("CYP1");
_molecule2 = DomainHelperForSpecs.DefaultIndividualMolecule().WithName("CYP2");
A.CallTo(() => individual.AllMolecules()).Returns(new[] { _molecule1, _molecule2 });
_randomPopulation.Settings.BaseIndividual = individual;
A.CallTo(() => _advancedParametersTask.AddAdvancedParameter(A <IAdvancedParameter> ._, _randomPopulation))
.Invokes(x =>
{
var advancedParameter = x.GetArgument <IAdvancedParameter>(0);
_randomPopulation.AddAdvancedParameter(advancedParameter);
})
.Returns(new AddAdvancedParameterToContainerCommand(A.Fake <IAdvancedParameter>(), _randomPopulation, _executionContext));
}
public MoleculeParameterVariabilityCreator(IAdvancedParameterFactory advancedParameterFactory, IMoleculeParameterRepository moleculeParameterRepository,
IAdvancedParametersTask advancedParametersTask, IExecutionContext executionContext)
{
_advancedParameterFactory = advancedParameterFactory;
_moleculeParameterRepository = moleculeParameterRepository;
_advancedParametersTask = advancedParametersTask;
_executionContext = executionContext;
}
public AdvancedParameterMapper(
ParameterMapper parameterMapper,
IAdvancedParameterFactory advancedParameterFactory,
IEntityPathResolver entityPathResolver,
ILogger logger) : base(parameterMapper)
{
_advancedParameterFactory = advancedParameterFactory;
_entityPathResolver = entityPathResolver;
_logger = logger;
}
public ImportPopulationFactory(IObjectBaseFactory objectBaseFactory, IProgressManager progressManager,
IIndividualPropertiesCacheImporter individualPropertiesCacheImporter, ICloner cloner, IContainerTask containerTask, IAdvancedParameterFactory advancedParameterFactory)
{
_objectBaseFactory = objectBaseFactory;
_progressManager = progressManager;
_individualPropertiesCacheImporter = individualPropertiesCacheImporter;
_cloner = cloner;
_containerTask = containerTask;
_advancedParameterFactory = advancedParameterFactory;
}
public ImportSimulationTask(ISimulationTransferLoader simulationTransferLoader, ISimulationFactory simulationFactory, IEntitiesInContainerRetriever parameterRetriever, ISimulationBuildingBlockUpdater simulationBuildingBlockUpdater,
IIndividualPropertiesCacheImporter individualPropertiesCacheImporter, IExecutionContext executionContext, IObjectBaseFactory objectBaseFactory,
ISimulationUpdaterAfterDeserialization simulationUpdaterAfterDeserialization, IAdvancedParameterFactory advancedParameterFactory)
{
_simulationTransferLoader = simulationTransferLoader;
_simulationFactory = simulationFactory;
_parameterRetriever = parameterRetriever;
_simulationBuildingBlockUpdater = simulationBuildingBlockUpdater;
_individualPropertiesCacheImporter = individualPropertiesCacheImporter;
_executionContext = executionContext;
_objectBaseFactory = objectBaseFactory;
_simulationUpdaterAfterDeserialization = simulationUpdaterAfterDeserialization;
_advancedParameterFactory = advancedParameterFactory;
}
protected override void Context()
{
_simulationTransferLoader = A.Fake <ISimulationTransferLoader>();
_simulationFactory = A.Fake <ISimulationFactory>();
_parameterRetriever = A.Fake <IEntitiesInContainerRetriever>();
_simulationBuildingBlockUpdater = A.Fake <ISimulationBuildingBlockUpdater>();
_executionContext = A.Fake <IExecutionContext>();
_individualPropertiesCacheImporter = A.Fake <IIndividualPropertiesCacheImporter>();
_objectBaseFactory = A.Fake <IObjectBaseFactory>();
_simulationUpdaterAfterDeserialization = A.Fake <ISimulationUpdaterAfterDeserialization>();
_advancedParameterFactory = A.Fake <IAdvancedParameterFactory>();
sut = new ImportSimulationTask(_simulationTransferLoader, _simulationFactory, _parameterRetriever,
_simulationBuildingBlockUpdater, _individualPropertiesCacheImporter, _executionContext, _objectBaseFactory,
_simulationUpdaterAfterDeserialization, _advancedParameterFactory);
}
protected override void Context()
{
_containerTask = A.Fake <IContainerTask>();
_progressManager = A.Fake <IProgressManager>();
_individualCacheImporter = A.Fake <IIndividualPropertiesCacheImporter>();
_cloner = A.Fake <ICloner>();
_objectBaseFactory = A.Fake <IObjectBaseFactory>();
_advancedParameterFactory = A.Fake <IAdvancedParameterFactory>();
_createdPopulation = A.Fake <ImportPopulation>();
_individual = new Individual();
_cloneIndividual = new Individual();
A.CallTo(() => _cloner.Clone(_individual)).Returns(_cloneIndividual);
A.CallTo(() => _objectBaseFactory.Create <ImportPopulation>()).Returns(_createdPopulation);
A.CallTo(() => _createdPopulation.IndividualPropertiesCache).Returns(A.Fake <IndividualPropertiesCache>());
sut = new ImportPopulationFactory(_objectBaseFactory, _progressManager, _individualCacheImporter, _cloner, _containerTask, _advancedParameterFactory);
_popFile1 = A.Fake <IndividualPropertiesCache>();
_popFile2 = A.Fake <IndividualPropertiesCache>();
A.CallTo(() => _individualCacheImporter.ImportFrom(_file1, A <IImportLogger> ._)).Returns(_popFile1);
A.CallTo(() => _individualCacheImporter.ImportFrom(_file2, A <IImportLogger> ._)).Returns(_popFile2);
}
public AdvancedParametersTask(IExecutionContext executionContext, IAdvancedParameterFactory advancedParameterFactory, IEntityPathResolver entityPathResolver)
{
_executionContext = executionContext;
_advancedParameterFactory = advancedParameterFactory;
_entityPathResolver = entityPathResolver;
}
