public HER2AmplificationResult(PanelSetOrderCollection panelSetOrderCollection, HER2AnalysisSummary.HER2AnalysisSummaryTestOrder panelSetOrder)
{
Her2AmplificationByIHC.Her2AmplificationByIHCTest her2AmplificationByIHCTest = new Her2AmplificationByIHC.Her2AmplificationByIHCTest();
HER2AmplificationRecount.HER2AmplificationRecountTest her2AmplificationRecountTest = new HER2AmplificationRecount.HER2AmplificationRecountTest();
this.m_HER2AnalysisSummaryTestOrder = panelSetOrder;
this.m_Indicator = this.m_HER2AnalysisSummaryTestOrder.Indicator;
this.m_AverageHer2Chr17SignalAsDouble = this.m_HER2AnalysisSummaryTestOrder.AverageHer2Chr17SignalAsDouble;
this.m_AverageHer2NeuSignal = this.m_HER2AnalysisSummaryTestOrder.AverageHer2NeuSignal;
this.m_IsHer2AmplificationByIHCRequired = true;
if (panelSetOrderCollection.Exists(her2AmplificationByIHCTest.PanelSetId) == true)
{
this.m_IsHer2AmplificationByIHCOrdered = true;
this.m_PanelSetOrderHer2AmplificationByIHC = (Her2AmplificationByIHC.PanelSetOrderHer2AmplificationByIHC)panelSetOrderCollection.GetPanelSetOrder(her2AmplificationByIHCTest.PanelSetId);
if (this.m_PanelSetOrderHer2AmplificationByIHC.Final == true)
{
if (this.m_PanelSetOrderHer2AmplificationByIHC.Score == "2+")
{
this.m_IsHER2AmplificationRecountRequired = true;
}
}
}
if (panelSetOrderCollection.Exists(her2AmplificationRecountTest.PanelSetId) == true)
{
this.m_IsHER2AmplificationRecountOrdered = true;
this.m_HER2AmplificationRecountTestOrder = (HER2AmplificationRecount.HER2AmplificationRecountTestOrder)panelSetOrderCollection.GetPanelSetOrder(her2AmplificationRecountTest.PanelSetId);
}
}
public void SetValues(AccessionOrder accessionOrder)
{
HER2AmplificationByISH.HER2AmplificationByISHTest ishTest = new HER2AmplificationByISH.HER2AmplificationByISHTest();
Her2AmplificationByIHC.Her2AmplificationByIHCTest ihcTest = new Her2AmplificationByIHC.Her2AmplificationByIHCTest();
HER2AmplificationRecount.HER2AmplificationRecountTest recountTest = new HER2AmplificationRecount.HER2AmplificationRecountTest();
HER2AmplificationByISH.HER2AmplificationByISHTestOrder ishTestOrder = (HER2AmplificationByISH.HER2AmplificationByISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(ishTest.PanelSetId, this.m_OrderedOnId, true);
this.m_CellsCounted = ishTestOrder.CellsCounted;
this.m_TotalChr17SignalsCounted = ishTestOrder.TotalChr17SignalsCounted;
this.m_TotalHer2SignalsCounted = ishTestOrder.TotalHer2SignalsCounted;
this.m_Her2byIHCOrder = ishTestOrder.Her2byIHCOrder;
this.m_IncludeImmunoRecommendedComment = ishTestOrder.IncludeImmunoRecommendedComment;
this.m_IncludeResultComment = ishTestOrder.IncludeResultComment;
this.m_IncludePolysomyComment = ishTestOrder.IncludePolysomyComment;
this.m_PolysomyPercent = ishTestOrder.PolysomyPercent;
this.m_Chr17SignalRangeLow = ishTestOrder.Chr17SignalRangeLow;
this.m_Chr17SignalRangeHigh = ishTestOrder.Chr17SignalRangeHigh;
this.m_Her2SignalRangeLow = ishTestOrder.Her2SignalRangeLow;
this.m_Her2SignalRangeHigh = ishTestOrder.Her2SignalRangeHigh;
this.m_SampleAdequacy = ishTestOrder.SampleAdequacy;
this.m_ProbeSignalIntensity = ishTestOrder.ProbeSignalIntensity;
this.m_TechComment = ishTestOrder.TechComment;
this.m_SourceBlock = ishTestOrder.SourceBlock;
this.m_GeneticHeterogeneity = ishTestOrder.GeneticHeterogeneity;
this.m_Her2Chr17ClusterRatio = ishTestOrder.Her2Chr17ClusterRatio;
this.m_Indicator = ishTestOrder.Indicator;
this.m_NotInterpretable = ishTestOrder.NotInterpretable;
this.m_RecountRequired = false;
Her2AmplificationByIHC.PanelSetOrderHer2AmplificationByIHC ihcTestOrder = (Her2AmplificationByIHC.PanelSetOrderHer2AmplificationByIHC)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(ihcTest.PanelSetId, this.m_OrderedOnId, true);
this.m_IHCScore = ihcTestOrder.Score;
if (accessionOrder.PanelSetOrderCollection.Exists(recountTest.PanelSetId, this.m_OrderedOnId, true) == true)
{
HER2AmplificationRecount.HER2AmplificationRecountTestOrder recountTestOrder = (HER2AmplificationRecount.HER2AmplificationRecountTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(recountTest.PanelSetId, this.m_OrderedOnId, true);
this.m_CellsRecount = recountTestOrder.CellsCounted;
this.m_TotalChr17SignalsRecount = recountTestOrder.Chr17SignalsCounted;
this.m_TotalHer2SignalsRecount = recountTestOrder.Her2SignalsCounted;
this.m_RecountRequired = true;
}
this.m_Distribute = true;
}
public override AuditResult IsOkToFinalize(AccessionOrder accessionOrder)
{
AuditResult result = new AuditResult();
result.Status = AuditStatusEnum.OK;
Rules.MethodResult methodResult = base.IsOkToFinalize();
if (methodResult.Success == false)
{
result.Status = AuditStatusEnum.Failure;
result.Message = methodResult.Message;
}
if (result.Status == AuditStatusEnum.OK)
{
if (string.IsNullOrEmpty(this.m_Result) == true)
{
result.Status = AuditStatusEnum.Failure;
result.Message = "Unable to final as the result is not set.";
}
}
if (result.Status == AuditStatusEnum.OK)
{
if (this.m_Result == HER2AmplificationResultEnum.Equivocal.ToString())
{
Test.Her2AmplificationByIHC.Her2AmplificationByIHCTest her2AmplificationByIHCTest = new Her2AmplificationByIHC.Her2AmplificationByIHCTest();
HER2AnalysisSummary.HER2AnalysisSummaryTest her2AmplificationSummaryTest = new HER2AnalysisSummary.HER2AnalysisSummaryTest();
if (accessionOrder.PanelSetOrderCollection.Exists(her2AmplificationByIHCTest.PanelSetId, this.OrderedOnId, true) == false)
{
result.Status = AuditStatusEnum.Warning;
result.Message = "This test will be finalized but not distributed as a " + her2AmplificationByIHCTest.PanelSetName +
" is needed to determine the actual result and will be ordered." + Environment.NewLine + "A " + her2AmplificationSummaryTest.PanelSetName +
" will be also be ordered and set for distribution.";
}
}
}
return(result);
}
public AuditResult IsOkToSetResults(AccessionOrder accessionOrder)
{
AuditResult result = new AuditResult();
result.Status = AuditStatusEnum.OK;
if (this.m_Accepted == true)
{
result.Status = AuditStatusEnum.Failure;
result.Message = "The results may not be set because they have already been accepted." + Environment.NewLine;
}
if (string.IsNullOrEmpty(this.m_Indicator) == true)
{
result.Status = AuditStatusEnum.Failure;
result.Message += "The indication must be set before results can be set." + Environment.NewLine;
}
if (this.m_NotInterpretable == false)
{
if (this.TotalHer2SignalsCountToUse == 0)
{
result.Status = AuditStatusEnum.Failure;
string whichCount = this.m_RecountRequired == true ? "The Total Her2 Signals Recount " : "The Total Her2 Signals Counted ";
result.Message += whichCount + "must be set before results can be set." + Environment.NewLine;
}
if (this.m_TotalChr17SignalsCounted == 0)
{
result.Status = AuditStatusEnum.Failure;
string whichCount = this.m_RecountRequired == true ? "The Total Chr17 Signals Recount " : "The Total Chr17 Signals Counted ";
result.Message += whichCount + "must be set before results can be set." + Environment.NewLine;
}
if (this.m_CellsCounted == 0)
{
result.Status = AuditStatusEnum.Failure;
string whichCount = this.m_RecountRequired == true ? "The Cells Recount " : "The Cells Counted ";
result.Message += "must be set before results can be set." + Environment.NewLine;
}
if (this.m_GeneticHeterogeneity == HER2AmplificationByISH.HER2AmplificationByISHGeneticHeterogeneityCollection.GeneticHeterogeneityPresentInClusters)
{
if (string.IsNullOrEmpty(this.m_Her2Chr17ClusterRatio) == true)
{
result.Status = AuditStatusEnum.Failure;
result.Message += "The Her2Chr/17 Cluster Ratio must be set before results can be set." + Environment.NewLine;
}
}
}
if (result.Status == AuditStatusEnum.OK)
{
Her2AmplificationByIHC.Her2AmplificationByIHCTest ihcTest = new Her2AmplificationByIHC.Her2AmplificationByIHCTest();
HER2AmplificationRecount.HER2AmplificationRecountTest recountTest = new HER2AmplificationRecount.HER2AmplificationRecountTest();
if (accessionOrder.PanelSetOrderCollection.Exists(ihcTest.PanelSetId, this.OrderedOnId, true) == true)
{
Her2AmplificationByIHC.PanelSetOrderHer2AmplificationByIHC testOrder = (Her2AmplificationByIHC.PanelSetOrderHer2AmplificationByIHC)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(ihcTest.PanelSetId, this.OrderedOnId, true);
if (testOrder.Final == false)
{
result.Status = AuditStatusEnum.Failure;
result.Message += "The " + ihcTest.PanelSetName + " must be final before results can be set." + Environment.NewLine;
}
else
{
if (testOrder.Score == "2+")
{
if (accessionOrder.PanelSetOrderCollection.Exists(recountTest.PanelSetId, this.OrderedOnId, true) == true)
{
HER2AmplificationRecount.HER2AmplificationRecountTestOrder recountTestOrder = (HER2AmplificationRecount.HER2AmplificationRecountTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(recountTest.PanelSetId, this.OrderedOnId, true);
if (recountTestOrder.Final == false)
{
result.Status = AuditStatusEnum.Failure;
result.Message += "The " + recountTest.PanelSetName + " must be final before results can be set." + Environment.NewLine;
}
}
else
{
result.Status = AuditStatusEnum.Failure;
result.Message += "A " + recountTest.PanelSetName + " must be ordered and final before results can be set." + Environment.NewLine;
}
}
}
}
else
{
result.Status = AuditStatusEnum.Failure;
result.Message += "A " + ihcTest.PanelSetName + " must be ordered and final before results can be set." + Environment.NewLine;
}
}
return(result);
}