/// <summary>
///
/// </summary>
/// <param name="_objectId"></param>
/// <param name="_attribute"></param>
public static void UpdateAttribute(Hdf5Identifier _objectId, Hdf5Attribute _attribute)
{
Hdf5Identifier attributeId = H5A.open(_objectId.Value, _attribute.Name).ToId();
if (attributeId.Value > 0)
{
Hdf5DataType type = TypeHelper.GetDataTypeFromAttribute(attributeId);
Hdf5DataTypes enumType = TypeHelper.GetDataTypesEnum(_attribute.Value.GetType());
if (type.Type == enumType)
{
if (enumType == Hdf5DataTypes.String)
{
H5A.close(attributeId.Value);
DeleteAttribute(_objectId, _attribute.Name);
Hdf5Attribute attribute = CreateAttribute(_objectId, _attribute.Name, _attribute.Value);
if (attribute != null)
{
_attribute.Id = attribute.Id;
_attribute.Name = attribute.Name;
_attribute.Value = attribute.Value;
}
}
else
{
WriteObjectValue(type, attributeId, _attribute.Value);
}
}
else
{
throw new Hdf5TypeMismatchException();
}
}
}
public static Hdf5Dataset CreateDatasetAddToDatasets(
ReadonlyNamedItemList <Hdf5Dataset> _datasets,
Hdf5Identifier _fileId,
Hdf5Path _parentPath,
string _name,
Hdf5DataTypes _datatype,
int _numberOfDimensions,
List <Hdf5DimensionProperty> _properties,
Hdf5CompressionProperty _compressionProperty = null)
{
Hdf5Dataset dataset = CreateDataset(
_fileId,
_parentPath,
_name,
_datatype,
_numberOfDimensions,
_properties,
_compressionProperty);
if (dataset != null)
{
_datasets.Add(dataset);
}
return(dataset);
}
public static Hdf5Dataset CreateDataset(
Hdf5Identifier _fileId,
Hdf5Path _parentPath,
string _name,
Hdf5DataTypes _datatype,
int _numberOfDimensions,
List <Hdf5DimensionProperty> _properties)
{
Hdf5Path path = _parentPath.Append(_name);
UInt64[] dimensionSize = new UInt64[_numberOfDimensions];
UInt64[] maxSize = null; // new UInt64[_numberOfDimensions];
int i = 0;
foreach (var property in _properties)
{
dimensionSize[i] = property.CurrentSize;
//if (property.MaximumSize == UInt64.MaxValue)
//{
// maxSize[i] = H5S.UNLIMITED;
//}
//else
//{
// maxSize[i] = property.MaximumSize;
//}
i++;
}
Hdf5Identifier dataspaceId = H5S.create_simple(_numberOfDimensions, dimensionSize, maxSize).ToId();
//TODO handle string datasets
Hdf5Identifier typeId = H5T.copy(TypeHelper.GetNativeType(_datatype).Value).ToId();
var status = H5T.set_order(typeId.Value, H5T.order_t.LE);
Hdf5Identifier datasetId = H5D.create(_fileId.Value, path.FullPath, typeId.Value, dataspaceId.Value).ToId();
Hdf5Dataset dataset = null;
if (datasetId.Value > 0)
{
dataset = new Hdf5Dataset(_fileId, datasetId, path.FullPath)
{
DataType = TypeHelper.GetDataTypeFromDataset(datasetId),
Dataspace = DataspaceHelper.GetDataspace(datasetId)
};
H5D.close(datasetId.Value);
}
H5T.close(typeId.Value);
FileHelper.FlushToFile(_fileId);
return(dataset);
}
public void SetData <T>(T[,] _array)
{
Hdf5DataTypes internalType = TypeHelper.GetDataTypesEnum(typeof(T));
if (_array == null)
{
throw new ArgumentNullException();
}
if (!internalType.Equals(DataType.Type))
{
throw new Hdf5TypeMismatchException();
}
DatasetHelper.Write2DArray <T>(this, _array);
}
/// <summary>
/// Adds a dataset
/// </summary>
/// <param name="_name"></param>
/// <param name="_datatype"></param>
/// <param name="_dimensionProperties"></param>
/// <returns></returns>
public Hdf5Dataset Add(
string _name,
Hdf5DataTypes _datatype,
List <Hdf5DimensionProperty> _dimensionProperties)
{
int numberOfDimensions = _dimensionProperties.Count;
return(DatasetHelper.CreateDatasetAddToDatasets(
this,
ParentObject.FileId,
ParentObject.Path,
_name,
_datatype,
numberOfDimensions,
_dimensionProperties));
}
/// <summary>
/// Returns the native type from HDF5
/// </summary>
/// <param name="_datatype"></param>
/// <returns></returns>
public static Hdf5Identifier GetNativeType(Hdf5DataTypes _datatype)
{
switch (_datatype)
{
case Hdf5DataTypes.UInt8:
return(H5T.NATIVE_UINT8.ToId());
case Hdf5DataTypes.UInt16:
return(H5T.NATIVE_UINT16.ToId());
case Hdf5DataTypes.UInt32:
return(H5T.NATIVE_UINT32.ToId());
case Hdf5DataTypes.UInt64:
return(H5T.NATIVE_UINT64.ToId());
case Hdf5DataTypes.Int8:
return(H5T.NATIVE_INT8.ToId());
case Hdf5DataTypes.Int16:
return(H5T.NATIVE_INT16.ToId());
case Hdf5DataTypes.Int32:
return(H5T.NATIVE_INT32.ToId());
case Hdf5DataTypes.Int64:
return(H5T.NATIVE_INT64.ToId());
case Hdf5DataTypes.Single:
return(H5T.NATIVE_FLOAT.ToId());
case Hdf5DataTypes.Double:
return(H5T.NATIVE_DOUBLE.ToId());
case Hdf5DataTypes.String:
return(H5T.C_S1.ToId());
}
throw new ArgumentOutOfRangeException("_datatype", "Unknown type");
}
public static Hdf5Dataset CreateDataset(
Hdf5Identifier _fileId,
Hdf5Path _parentPath,
string _name,
Hdf5DataTypes _datatype,
int _numberOfDimensions,
List <Hdf5DimensionProperty> _properties,
Hdf5CompressionProperty _compressionProperty = null)
{
Hdf5Path path = _parentPath.Append(_name);
UInt64[] dimensionSize = new UInt64[_numberOfDimensions];
UInt64[] maxSize = null; // new UInt64[_numberOfDimensions];
if (_numberOfDimensions != _properties.Count ||
(_compressionProperty != null && _numberOfDimensions != _compressionProperty.ChunkDimensions.Length))
{
throw new Hdf5ArrayDimensionsMismatchException();
}
int i = 0;
foreach (var property in _properties)
{
dimensionSize[i] = property.CurrentSize;
if (_compressionProperty != null && _compressionProperty.ChunkDimensions[i] > property.CurrentSize)
{
throw new Hdf5ArraySizeMismatchException();
}
i++;
}
Hdf5Identifier dataspaceId = H5S.create_simple(_numberOfDimensions, dimensionSize, maxSize).ToId();
//TODO handle string datasets
Hdf5Identifier typeId = H5T.copy(TypeHelper.GetNativeType(_datatype).Value).ToId();
var status = H5T.set_order(typeId.Value, H5T.order_t.LE);
var plist_id = _compressionProperty != null?H5P.create(H5P.DATASET_CREATE) : 0;
if (plist_id != 0)
{
H5P.set_chunk(plist_id, _compressionProperty.ChunkDimensions.Length, _compressionProperty.ChunkDimensions);
H5P.set_deflate(plist_id, _compressionProperty.CompressionLevel);
}
Hdf5Identifier datasetId = H5D.create(_fileId.Value, path.FullPath, typeId.Value, dataspaceId.Value, dcpl_id: plist_id).ToId();
Hdf5Dataset dataset = null;
if (datasetId.Value > 0)
{
dataset = new Hdf5Dataset(_fileId, datasetId, path.FullPath)
{
DataType = TypeHelper.GetDataTypeFromDataset(datasetId),
Dataspace = DataspaceHelper.GetDataspace(datasetId)
};
H5D.close(datasetId.Value);
}
H5T.close(typeId.Value);
if (plist_id != 0)
{
H5P.close(plist_id);
}
FileHelper.FlushToFile(_fileId);
return(dataset);
}
