public void load_weights(string filepath, bool by_name = false, bool skip_mismatch = false, object options = null)
{
long fileId = Hdf5.OpenFile(filepath, true);
if (fileId < 0)
{
tf_output_redirect.WriteLine($"Can't find weights file {filepath}");
return;
}
bool msuccess = Hdf5.GroupExists(fileId, "model_weights");
bool lsuccess = Hdf5.GroupExists(fileId, "layer_names");
if (!lsuccess && msuccess)
{
fileId = H5G.open(fileId, "model_weights");
}
if (by_name)
{
//fdf5_format.load_weights_from_hdf5_group_by_name();
throw new NotImplementedException("");
}
else
{
hdf5_format.load_weights_from_hdf5_group(fileId, Layers);
Hdf5.CloseFile(fileId);
}
}
public List <(IVariableV1, NDArray)> load_weights(string filepath, bool by_name = false, bool skip_mismatch = false, object options = null)
{
long fileId = Hdf5.OpenFile(filepath, true);
bool msuccess = Hdf5.GroupExists(fileId, "model_weights");
bool lsuccess = Hdf5.GroupExists(fileId, "layer_names");
if (!lsuccess && msuccess)
{
fileId = H5G.open(fileId, "model_weights");
}
if (by_name)
{
//fdf5_format.load_weights_from_hdf5_group_by_name();
throw new NotImplementedException("");
}
else
{
var weights = hdf5_format.load_weights_from_hdf5_group(fileId, Layers);
Hdf5.CloseFile(fileId);
// return a reference to prevent GC collect Variable.
return(weights);
}
}
public void ReadSystemEvents()
{
string groupName = rootName + eventsName;
if (Hdf5.GroupExists(fileId, groupName))
{
var e = Hdf5.ReadCompounds <SystemEvent>(fileId, groupName, "");
Events.AddRange(e);
}
}
public void WriteAndReadGroupsWithDataset()
{
string filename = Path.Combine(folder, "testGroups.H5");
try
{
var fileId = Hdf5.CreateFile(filename);
Assert.IsTrue(fileId > 0);
var dset = dsets.First();
var groupId = H5G.create(fileId, "/A"); ///B/C/D/E/F/G/H
Hdf5.WriteDataset(groupId, "test", dset);
var subGroupId = Hdf5.CreateGroup(groupId, "C");
var subGroupId2 = Hdf5.CreateGroup(groupId, "/D"); // will be saved at the root location
dset = dsets.Skip(1).First();
Hdf5.WriteDataset(subGroupId, "test2", dset);
Hdf5.CloseGroup(subGroupId);
Hdf5.CloseGroup(subGroupId2);
Hdf5.CloseGroup(groupId);
groupId = H5G.create(fileId, "/A/B"); ///B/C/D/E/F/G/H
dset = dsets.Skip(1).First();
Hdf5.WriteDataset(groupId, "test", dset);
Hdf5.CloseGroup(groupId);
groupId = Hdf5.CreateGroupRecursively(fileId, "A/B/C/D/E/F/I");
Hdf5.CloseGroup(groupId);
Hdf5.CloseFile(fileId);
fileId = Hdf5.OpenFile(filename);
Assert.IsTrue(fileId > 0);
groupId = H5G.open(fileId, "/A/B");
double[,] dset2 = (double[, ])Hdf5.ReadDataset <double>(groupId, "test");
CompareDatasets(dset, dset2);
Assert.IsTrue(Hdf5.CloseGroup(groupId) >= 0);
groupId = H5G.open(fileId, "/A/C");
dset2 = (double[, ])Hdf5.ReadDataset <double>(groupId, "test2");
CompareDatasets(dset, dset2);
Assert.IsTrue(Hdf5.CloseGroup(groupId) >= 0);
bool same = dset == dset2;
dset = dsets.First();
dset2 = (double[, ])Hdf5.ReadDataset <double>(fileId, "/A/test");
CompareDatasets(dset, dset2);
Assert.IsTrue(Hdf5.GroupExists(fileId, "A/B/C/D/E/F/I"));
Assert.IsTrue(Hdf5.CloseFile(fileId) == 0);
}
catch (Exception ex)
{
CreateExceptionAssert(ex);
}
}
public void ReadPatientInformation()
{
string groupName = rootName + patient_informationName;
if (Hdf5.GroupExists(fileId, groupName))
{
PatientInformation = Hdf5.ReadObject <Patient>(fileId, groupName);
return;
}
groupName = rootNameOld + patient_informationName;
if (Hdf5.GroupExists(fileId, groupName))
{
PatientInformation = Hdf5.ReadObject <Patient>(fileId, groupName);
}
}
public void ReadProcedureInformation()
{
string groupName = rootName + procedure_informationName;
if (Hdf5.GroupExists(fileId, groupName))
{
ProcedureInformation = Hdf5.ReadObject <ProcedureInformation>(fileId, groupName);
return;
}
groupName = rootNameOld + procedure_informationName;
if (Hdf5.GroupExists(fileId, groupName))
{
ProcedureInformation = Hdf5.ReadObject <ProcedureInformation>(fileId, groupName);
}
}
public void ReadSystemInformation()
{
string groupName = rootName + system_informationName;
if (Hdf5.GroupExists(fileId, groupName))
{
SystemInformation = Hdf5.ReadObject <SystemInformation>(fileId, groupName);
return;
}
groupName = rootNameOld + system_informationName;
if (Hdf5.GroupExists(fileId, groupName))
{
SystemInformation = Hdf5.ReadObject <SystemInformation>(fileId, groupName);
}
}
public void ReadECGData()
{
string groupName = rootName + ecgName;
if (Hdf5.GroupExists(fileId, groupName))
{
ECG = Hdf5.ReadObject <ECGData>(fileId, groupName);
return;
}
groupName = rootNameOld + ecgName;
if (Hdf5.GroupExists(fileId, groupName))
{
ECG = Hdf5.ReadObject <ECGData>(fileId, groupName);
}
}
public void ReadEITData()
{
int index = 1;
string rootGroup = rootName + eitName;
if (!Hdf5.GroupExists(fileId, rootGroup))
{
rootGroup = rootNameOld + eitName;
}
while (Hdf5.GroupExists(fileId, rootGroup + "/d" + index))
{
var entry = Hdf5.ReadObject <EITEntry>(fileId, rootGroup + "/d" + index);
EITs.Add(entry);
index++;
}
}