/// <summary>
/// This method returns the list of genbankID with its definition.
/// Throws an exception of any error accessing the database occurs.
/// </summary>
public static XmlDocument listDefinitions()
{
XmlDocument doc = new XmlDocument();
doc.AppendChild(dictionaryToXML(GDDL.listDefinitions(), doc));
return(doc);
}
/// <summary>
/// This method returns the list of genbankID with its corresponding molecule stand topology.
/// Throws an exception of any error accessing the database occurs.
/// </summary>
public static XmlDocument listStrandTopologies()
{
XmlDocument doc = new XmlDocument();
doc.AppendChild(dictionaryToXML(GDDL.listStrandTopologies(), doc));
return(doc);
}
public static List <string> getAccessionVersion(string genbankID)
{
List <string> accession_version = GDDL.getAccessionVersion(genbankID);
if (accession_version.Count < 1)
{
throw new Exception("No match found");
}
return(accession_version);
}
public static List <string> getDefinitions(string genbankID)
{
List <string> definition = GDDL.getDefinitions(genbankID);
if (definition.Count < 1)
{
throw new Exception("No match found");
}
return(definition);
}
public static List <string> ListNucleotideLocations(string accession_version)
{
List <string> nucleotide_locations = GDDL.ListNucleotideSequenceLocations(accession_version);
if (nucleotide_locations.Count < 1)
{
throw new Exception("No match found");
}
return(nucleotide_locations);
}
public static List <string> getGenes(string accession_version)
{
List <string> genes = GDDL.getGenes(accession_version);
if (genes.Count < 1)
{
throw new Exception("No match found");
}
return(genes);
}
public static List <string> getProteinIDs(string accession_version)
{
List <string> protein_ids = GDDL.getProteinIDs(accession_version);
if (protein_ids.Count < 1)
{
throw new Exception("No match found");
}
return(protein_ids);
}
public static string getStrandType(string genbankID)
{
string strand = GDDL.getStrandType(genbankID);
if (strand == null)
{
throw new Exception("No match found");
}
return(strand);
}
public static string getStrandTopology(string genbankID)
{
string strand_topology = GDDL.getStrandTopology(genbankID);
if (strand_topology == null)
{
throw new Exception("No match found");
}
return(strand_topology);
}
/// <summary>
/// This method returns the name of prokaryote of provided genBankID.
/// Throws an exception of any error accessing the database occurs.
/// </summary>
/// <param name="genbankID">Genbank identifier.</param>
public static string getProkaryote(string genbankID)
{
string prokaryote = GDDL.getProkaryote(genbankID);
if (prokaryote == null)
{
throw new Exception("No match found");
}
return(prokaryote);
}
public static string getMoleculeType(string genbankID)
{
string molecule = GDDL.getMoleculeType(genbankID);
if (molecule == null)
{
throw new Exception("No match found");
}
return(molecule);
}
public static List <string> getTitles(string genbankID)
{
List <string> title = GDDL.getTitles(genbankID);
if (title.Count < 1)
{
throw new Exception("No match found");
}
return(title);
}
public static string getSequence(string genbankID)
{
string sequence = GDDL.getSequence(genbankID);
if (sequence == null)
{
throw new Exception("No match found");
}
return(sequence);
}
public static List <string> getJournals(string genbankID)
{
List <string> journal = GDDL.getJournals(genbankID);
if (journal.Count < 1)
{
throw new Exception("No match found");
}
return(journal);
}
public static List <string> getProjects(string genbankID)
{
List <string> project = GDDL.getProjects(genbankID);
if (project.Count < 1)
{
throw new Exception("No match found");
}
return(project);
}
public static string getProkaryoteClassLevel(string genbankID)
{
string prokaryote_class_level = GDDL.getProkaryoteClassLevel(genbankID);
if (prokaryote_class_level == null)
{
throw new Exception("No match found");
}
return(prokaryote_class_level);
}
public static string getNucleotideSequence(string accession_version, string start, string end)
{
string nucleotide_sequence = GDDL.getNucleotideSequence(accession_version, start, end);
if (nucleotide_sequence == null)
{
throw new Exception("No match found");
}
return(nucleotide_sequence);
}
public static List <string> getGiNumber(string genbankID)
{
List <string> ginumber = GDDL.getGiNumber(genbankID);
if (ginumber.Count < 1)
{
throw new Exception("No match found");
}
return(ginumber);
}
/// <summary>
/// This method returns the Lists of the strand code attributes.
/// Throws an exception of any error accessing the datbase occurs.
/// </summary>
public static List <string> listStrandCodeAttributes()
{
return(GDDL.listStrandCodeAttributes());
}
/// <summary>
/// This method returns the Lists of the division code attributes.
/// Throws an exception of any error accesing the database occurs.
/// </summary>
public static List <string> listDivisionCodeAttributes()
{
return(GDDL.listDivisionCodeAttributes());
}
/// <summary>
/// This method returns the Lists of the molecule code attributes.
/// Throws an exception of any error accessing the datbase occurs.
/// </summary>
public static List <string> listMoleculeCodeAttributes()
{
return(GDDL.listMoleculeCodeAttributes());
}
/// <summary>
/// This method returns the Lists of the strand topology attributes.
/// Throws an exception of any error accessing the datbase occurs.
/// </summary>
public static List <string> listStrandTopologyAttributes()
{
return(GDDL.listStrandTopologyAttributes());
}
