private void AddFolderFileMenuItem_Click(object sender, RoutedEventArgs e)
{
var addFolderFileMenuItem = e.Source as MenuItem;
if (addFolderFileMenuItem != null)
{
var formatInfo = FileDialogFormatInfoFactory.Create(addFolderFileMenuItem.Tag.ToString());
var folderBrowser = new CommonOpenFileDialog();
folderBrowser.IsFolderPicker = true;
var result = folderBrowser.ShowDialog();
var thing = "";
if (result == CommonFileDialogResult.Ok)
{
thing = folderBrowser.FileName;
}
var filters = formatInfo.Filter.Split('|');
if (thing != "")
{
var directory = new DirectoryInfo(thing);
foreach (var filter in filters)
{
if (!filter.Contains("."))
{
continue;
}
filters = filter.Split(';');
foreach (var fileExt in filters)
{
foreach (var file in directory.GetFiles(fileExt, SearchOption.AllDirectories))
{
if (file.Name.EndsWith("msgfdb_syn.txt"))
{
formatInfo.Format = LcmsIdentificationTool.MsgfPlus;
}
else if (file.Name.EndsWith("_syn.txt"))
{
formatInfo.Format = LcmsIdentificationTool.Sequest;
}
else if (file.Name.EndsWith("_xt.txt"))
{
formatInfo.Format = LcmsIdentificationTool.XTandem;
}
else if (file.Name.EndsWith("msalign_syn.txt"))
{
formatInfo.Format = LcmsIdentificationTool.MSAlign;
}
AnalysisJobViewModel.AnalysisJobItems.Add(new AnalysisJobItem(file.FullName,
formatInfo.Format));
if (formatInfo.Format == LcmsIdentificationTool.MSAlign)
{
AnalysisJobViewModel.Options.TargetFilterType = TargetWorkflowType.TOP_DOWN;
}
}
}
}
}
}
}
private void AddFileMenuItem_Click(object sender, RoutedEventArgs e)
{
var addFileMenuItem = e.Source as MenuItem;
if (addFileMenuItem != null)
{
var formatInfo = FileDialogFormatInfoFactory.Create(addFileMenuItem.Tag.ToString());
var openFileDialog = new Microsoft.Win32.OpenFileDialog
{
RestoreDirectory = true,
Multiselect = true,
Title = formatInfo.Title,
Filter = formatInfo.Filter
};
var dialogRes = openFileDialog.ShowDialog();
if (dialogRes.HasValue && dialogRes.Value == true)
{
if (formatInfo.Format != LcmsIdentificationTool.Description)
{
foreach (var fileName in openFileDialog.FileNames)
{
if (fileName.EndsWith("msgfdb_syn.txt"))
{
formatInfo.Format = LcmsIdentificationTool.MsgfPlus;
}
else if (fileName.EndsWith("_syn.txt"))
{
formatInfo.Format = LcmsIdentificationTool.Sequest;
}
else if (fileName.EndsWith("_xt.txt"))
{
formatInfo.Format = LcmsIdentificationTool.XTandem;
}
else if (fileName.EndsWith("msalign_syn.txt"))
{
formatInfo.Format = LcmsIdentificationTool.MSAlign;
}
AnalysisJobViewModel.AnalysisJobItems.Add(new AnalysisJobItem(fileName, formatInfo.Format));
if (formatInfo.Format == LcmsIdentificationTool.MSAlign)
{
AnalysisJobViewModel.Options.TargetFilterType = TargetWorkflowType.TOP_DOWN;
}
}
}
else
{
var analysisJobDescriptionReader = new AnalysisJobDescriptionReader();
foreach (var fileName in openFileDialog.FileNames)
{
try
{
foreach (var analysisJobItem in analysisJobDescriptionReader.Read(fileName))
{
AnalysisJobViewModel.AnalysisJobItems.Add(analysisJobItem);
}
}
catch
{
MessageBox.Show(
this, String.Format(
"MTDB Creator cannot read this file.{0}This is not a valid Dataset Description file, or its format is not correct.{0}{0}{1}",
Environment.NewLine, fileName), Application.Current.MainWindow.Tag.ToString(),
MessageBoxButton.OK, MessageBoxImage.Warning);
}
}
}
MainListView.Focus();
}
}
}
