public void Test_Timing_DateTimePeriodIndexSetter_GoodFormat()
{
//Arrange
var Timing = new Timing();
DateTimePeriodIndex Index = new DateTimePeriodIndex();
var LowDate = new DateTimeOffset(1974, 12, 25, 10, 00, 00, new TimeSpan(-5, 00, 00));
var HighDate = new DateTimeOffset(1974, 12, 26, 11, 10, 00, new TimeSpan(-5, 00, 00));
Timing.EventElement = new System.Collections.Generic.List <FhirDateTime>();
var EventStart1 = new FhirDateTime(new DateTimeOffset(1974, 12, 26, 11, 00, 00, new TimeSpan(-5, 00, 00)));
var EventStart2 = new FhirDateTime(LowDate);
Timing.EventElement.Add(EventStart1);
Timing.EventElement.Add(EventStart2);
Timing.Repeat = new Timing.RepeatComponent();
Timing.Repeat.Duration = new decimal(10.0);
Timing.Repeat.DurationUnit = Timing.UnitsOfTime.Min;
//Calculation (ToDo: This still needs review)
//2min Duration + last EventStartdate (11:00am) = 11:20am 26/12/1974
//Act
Index = IndexSetterFactory.Create(typeof(DateTimePeriodIndex)).Set(Timing, Index) as DateTimePeriodIndex;
//Assert
Assert.AreEqual(Index.DateTimeOffsetLow, LowDate);
Assert.AreEqual(Index.DateTimeOffsetHigh, HighDate);
}
public static DateTime?ToDateTime(this FhirDateTime me)
{
if (me == null)
{
return(null);
}
DateTime result;
if (DateTime.TryParse(me.Value, out result))
{
return(result);
}
if (!string.IsNullOrEmpty(me.Value))
{
// the date didn't parse, one of the common mistakes
// with dates is not to include the - symbols
// so lets put them in and proceed
if (me.Value.Length == 8 && !me.Value.Contains("-"))
{
string newValue = me.Value.Insert(4, "-").Insert(7, "-");
System.Diagnostics.Debug.WriteLine(String.Format("Invalid Date [{0}] was encountered, processing it as though it was [{1}]", me.Value, newValue));
if (DateTime.TryParse(newValue, out result))
{
return(result);
}
}
}
return(null);
}
private static Patient GetSomePatientWithProfile(string patientId, string profile)
{
var date = new FhirDateTime(new DateTimeOffset(DateTime.Now));
return(new Patient
{
Meta = new Meta {
LastUpdated = date.ToDateTimeOffset(new TimeSpan()), Profile = new List <string> {
profile
}
},
Id = patientId,
Active = true,
Name =
new List <HumanName>
{
new HumanName {
Family = "Normann", Given = new List <string> {
"Ola"
}
}
},
Telecom =
new List <ContactPoint>
{
new ContactPoint {
System = ContactPoint.ContactPointSystem.Phone, Value = "123467890"
}
},
Gender = AdministrativeGender.Male,
BirthDate = "2000-01-01"
});
}
private void dataGridView1_CellValueChanged(object sender, DataGridViewCellEventArgs e)
{
string id = dataGridView1.Rows[e.RowIndex].Cells[0].Value.ToString();
string column = dataGridView1.Columns[e.ColumnIndex].Name.ToString();
string value = dataGridView1.Rows[e.RowIndex].Cells[e.ColumnIndex].Value.ToString();
switch (e.ColumnIndex)
{
case 1:
FhirDateTime dt = new FhirDateTime(value);
data[e.RowIndex].Effective = dt;
_client.Update <Observation>(data[e.RowIndex]);
//db.updateEffective(dt,ob);
break;
case 2:
Code c = new Code(value);
Hl7.Fhir.Model.ObservationStatus os = new Hl7.Fhir.Model.ObservationStatus();
// data[e.RowIndex].Status = c;
break;
case 3:
CodeableConcept cc = new CodeableConcept();
cc.Text = value;
data[e.RowIndex].Interpretation = cc;
_client.Update <Observation>(data[e.RowIndex]);
break;
}
Console.WriteLine(value);
}
public static Period ToPeriod(this FhirDateTime fdt)
{
var result = new Period();
var dtoStart = fdt.ToDateTimeOffset();
result.StartElement = new FhirDateTime(dtoStart);
var dtoEnd = dtoStart;
switch (fdt.Precision())
{
case FhirDateTimePrecision.Year: dtoEnd = dtoStart.AddYears(1); break;
case FhirDateTimePrecision.Month: dtoEnd = dtoStart.AddMonths(1); break;
case FhirDateTimePrecision.Day: dtoEnd = dtoStart.AddDays(1); break;
case FhirDateTimePrecision.Minute: dtoEnd = dtoStart.AddMinutes(1); break;
case FhirDateTimePrecision.Second: dtoEnd = dtoStart.AddSeconds(1); break;
default: dtoEnd = dtoStart; break;
}
result.EndElement = new FhirDateTime(dtoEnd);
return(result);
}
public void FhirDateTimeMapTest()
{
var input = new FhirDateTime(2015, 3, 14);
var result = _sut.Map(input);
CheckPeriod(result, "2015-03-14T00:00:00+00:00", "2015-03-15T00:00:00+00:00");
}
private static Base MockPatient()
{
var date = new FhirDateTime(new DateTimeOffset(DateTime.Now));
return(new Patient
{
Meta = new Meta {
LastUpdated = date.ToDateTimeOffset(new TimeSpan()), Profile = new List <string> {
"http://helse-nord.no/fhir/StructureDefinition/Clinical.Patient/Patient_HN"
}
},
Id = "12345678901",
Active = true,
Name =
new List <HumanName>
{
new HumanName {
Family = "Normann", Given = new List <string> {
"Ola"
}
}
},
Gender = AdministrativeGender.Male,
BirthDate = "2000-01-01"
});
}
public void ValidateResourceWithIncorrectChildElement()
{
// First create an incomplete encounter (class not supplied)
var enc = new Encounter();
enc.Status = Encounter.EncounterState.Planned;
validateErrorOrFail(enc, membername: "ClassElement");
validateErrorOrFail(enc, true); // recursive checking shouldn't matter
enc.Class = Encounter.EncounterClass.Ambulatory;
// Now, it should work
FhirValidator.Validate(enc);
FhirValidator.Validate(enc, true); // recursive checking shouldnt matter
// Hide an incorrect datetime deep into the Encounter
FhirDateTime dt = new FhirDateTime();
dt.Value = "Ewout Kramer"; // clearly, a wrong datetime
enc.Hospitalization = new Encounter.EncounterHospitalizationComponent();
enc.Hospitalization.Period = new Period()
{
StartElement = dt
};
// When we do not validate recursively, we should still be ok
FhirValidator.Validate(enc);
// When we recurse, this should fail
validateErrorOrFail(enc, true, membername: "Value");
}
private static Base MockPatient()
{
var date = new FhirDateTime(DateTime.Now);
return(new Patient
{
Meta = new Meta {
LastUpdated = date.ToDateTimeOffset(), Profile = new List <string> {
"http://helse-nord.no/FHIR/profiles/Identification.Patient/Patient"
}
},
Id = "12345678901",
Active = true,
Name =
new List <HumanName>
{
new HumanName {
Family = "Normann", Given = new List <string> {
"Ola"
}
}
},
Telecom =
new List <ContactPoint>
{
new ContactPoint {
System = ContactPoint.ContactPointSystem.Phone, Value = "123467890"
}
},
Gender = AdministrativeGender.Male,
BirthDate = "2000-01-01"
});
}
private static Base MockPatient()
{
var date = new FhirDateTime(System.DateTime.Now);
return(new Patient
{
Meta = new Meta {
LastUpdated = date.ToDateTimeOffset()
},
Id = "12345678901",
Active = true,
Name =
new List <HumanName>
{
new HumanName {
Family = new List <string> {
"Normann"
}, Given = new List <string> {
"Ola"
}
}
},
Telecom =
new List <ContactPoint>
{
new ContactPoint {
System = ContactPoint.ContactPointSystem.Phone, Value = "123467890"
}
},
Gender = AdministrativeGender.Male,
BirthDate = "2000-01-01"
});
}
public ItIndexElement GetElementAt(
FhirDateTime value)
{
return(this.Value
.Where(x => x.Value == value)
.SingleOrDefault());
}
public t(
FhirDateTime endDate,
Func <FhirDateTime, PositiveInt> numberDaysAfterStartDate,
FhirDateTime startDate)
{
this.Log = LogManager.GetLogger(System.Reflection.MethodBase.GetCurrentMethod().DeclaringType);
this.EndDate = endDate;
this.NumberDaysAfterStartDate = numberDaysAfterStartDate;
this.StartDate = startDate;
ImmutableList <FhirDateTime> .Builder builder = ImmutableList.CreateBuilder <FhirDateTime>();
for (DateTime i = startDate.ToDateTimeOffset(TimeSpan.Zero).UtcDateTime.Date; i <= endDate.ToDateTimeOffset(TimeSpan.Zero).UtcDateTime.Date; i = i.AddDays(1))
{
builder.Add(
new FhirDateTime(
new DateTimeOffset(
i)));
}
this.Value = builder.ToImmutableList();
}
public void DateTimeHandling()
{
FhirDateTime dt = new FhirDateTime("2010-01-01");
Assert.AreEqual("2010-01-01", dt.Value);
FhirDateTime dt2 = new FhirDateTime(1972, 11, 30, 15, 10);
Assert.IsTrue(dt2.Value.StartsWith("1972-11-30T15:10"));
Assert.AreNotEqual(dt2.Value, "1972-11-30T15:10");
FhirDateTime dtNoMs = new FhirDateTime("2014-12-11T00:00:00+11:00");
Assert.AreEqual("2014-12-11T00:00:00+11:00", dtNoMs.Value);
FhirDateTime dtWithMs = new FhirDateTime("2014-12-11T00:00:00.000+11:00");
Assert.AreEqual("2014-12-11T00:00:00.000+11:00", dtWithMs.Value);
var stamp = new DateTimeOffset(1972, 11, 30, 15, 10, 0, TimeSpan.Zero);
dt = new FhirDateTime(stamp);
Assert.IsTrue(dt.Value.EndsWith("Z"));
}
public static Parameters ConceptLookup(this IFhirClient client,
Code code = null, FhirUri system = null, FhirString version = null,
Coding coding = null, FhirDateTime date = null)
{
return(ConceptLookupAsync(client, code, system, version, coding, date).WaitResult());
}
public void Test_TimingToIndex_Test1()
{
//Arrange
var Timing = new Timing();
DateTimeOffset?ExpectedLow = new DateTimeOffset(1974, 12, 25, 10, 00, 00, new TimeSpan(-5, 00, 00)).ToUniversalTime();
DateTimeOffset?ExpectedHigh = new DateTimeOffset(1974, 12, 26, 11, 10, 00, new TimeSpan(-5, 00, 00)).ToUniversalTime();
Timing.EventElement = new System.Collections.Generic.List <FhirDateTime>();
var EventStart1 = new FhirDateTime(new DateTimeOffset(1974, 12, 26, 11, 00, 00, new TimeSpan(-5, 00, 00)));
var EventStart2 = new FhirDateTime(ExpectedLow.Value);
Timing.EventElement.Add(EventStart1);
Timing.EventElement.Add(EventStart2);
Timing.Repeat = new Timing.RepeatComponent();
Timing.Repeat.Duration = new decimal(10.0);
Timing.Repeat.DurationUnit = Timing.UnitsOfTime.Min;
//Act
DateTimeIndex Result = DateTimeIndexSupport.GetDateTimeIndex(Timing);
//Assert
Assert.AreEqual(ExpectedLow, Result.Low);
Assert.AreEqual(ExpectedHigh, Result.High);
}
public decimal GetdEdt(
FhirDateTime t_IndexElement,
Ip p,
Iβ β,
C19M.M.C.A.Gumel2004.Interfaces.Parameters.QuarantineRateAsymptomaticIndividuals.Iγ γ_1,
C19M.M.C.A.Gumel2004.Interfaces.Parameters.IsolationRateSymptomaticIndividuals.Iγ γ_2,
C19M.M.C.A.Gumel2004.Interfaces.Parameters.TransmissionCoefficientModificationFactorAsymptomaticIndividuals.Iε ε_E,
C19M.M.C.A.Gumel2004.Interfaces.Parameters.TransmissionCoefficientModificationFactorIsolatedIndividuals.Iε ε_J,
C19M.M.C.A.Gumel2004.Interfaces.Parameters.TransmissionCoefficientModificationFactorQuarantinedIndividuals.Iε ε_Q,
C19M.M.C.A.Gumel2004.Interfaces.Parameters.DevelopmentClinicalSymptomsRateAsymptomaticIndividuals.Iκ κ_1,
Iμ μ,
double E,
double I,
double J,
double N,
double Q,
double S)
{
return
(p.Value.Value.Value
+
(decimal)(S / N) * (β.Value.Value.Value) * ((decimal)I + ε_E.Value.Value.Value * (decimal)E + ε_Q.Value.Invoke(t_IndexElement).Value.Value *(decimal)Q + ε_J.Value.Invoke(t_IndexElement).Value.Value *(decimal)J)
-
(γ_1.Value.Invoke(t_IndexElement).Value.Value + κ_1.Value.Value.Value + μ.Value.Value.Value) * (decimal)E);
}
private ServiceRequest createPreorder(FhirDateTime date, Patient patient, Practitioner doctor, string[] serviceCodes, bool webstorePreorder, string contractID = null)
{
var order = new ServiceRequest
{
AuthoredOn = date.ToString(),
Status = RequestStatus.Active,
Intent = RequestIntent.Order,
Code = Constants.ORDER_PROCEDURE_REQUEST_CODE,
Category =
webstorePreorder ?
new List <CodeableConcept> {
new CodeableConcept("https://dia.medicover.com/dictionaries/requestcategory", "FFS"),
new CodeableConcept("https://dia.medicover.com/dictionaries/requestcategory/ffs", "UA.WebOnline")
} :
new List <CodeableConcept> {
new CodeableConcept("https://dia.medicover.com/dictionaries/requestcategory", "Contract"),
new CodeableConcept("https://dia.medicover.com/contract", contractID)
},
Subject = patient.GlobalURLReference(client.UseFullResourcePath),
Requester = doctor.GlobalURLReference(client.UseFullResourcePath),
OrderDetail = serviceCodes.Select(sc => new CodeableConcept("https://dia.medicover.com/serviceknowledgebase/service", sc)).ToList(),
Note = new List <Annotation> {
new Annotation {
Text = "Very important comment 1"
},
new Annotation {
Text = "Very important comment 2"
}
}
};
var fhirOrder = client.Create(order);
return(fhirOrder);
}
private ServiceRequest createOrder(FhirDateTime date, Patient patient, Practitioner doctor, string[] serviceCodes)
{
var order = new ServiceRequest
{
Identifier = new List <Identifier> {
new Identifier {
System = "https://dia.medicover.com/sampleID", Value = "999999999900"
}
},
AuthoredOn = date.ToString(),
Status = RequestStatus.Draft,
Intent = RequestIntent.Order,
Code = Constants.ORDER_PROCEDURE_REQUEST_CODE,
Subject = patient.GlobalURLReference(client.UseFullResourcePath),
Requester = doctor.GlobalURLReference(client.UseFullResourcePath),
OrderDetail = serviceCodes.Select(sc => new CodeableConcept("https://dia.medicover.com/serviceknowledgebase/service", sc)).ToList(),
Performer = new List <ResourceReference> {
Constants.CURRENT_LAB_REFERENCE
},
Note = new List <Annotation> {
new Annotation {
Text = "Very important comment 1"
},
new Annotation {
Text = "Very important comment 2"
}
}
};
var fhirOrder = client.Create(order);
return(fhirOrder);
}
public async Task <List <Tuple <string, string> > > GetGroupMembers(string groupId, DateTimeOffset groupMembershipTime, CancellationToken cancellationToken)
{
var groupResource = await _fhirDataStore.Value.GetAsync(new ResourceKey(KnownResourceTypes.Group, groupId), cancellationToken);
if (groupResource == null)
{
throw new ResourceNotFoundException($"Group {groupId} was not found.");
}
var group = _resourceDeserializer.Deserialize(groupResource);
var groupContents = group.ToPoco <Group>().Member;
var members = new List <Tuple <string, string> >();
foreach (Group.MemberComponent member in groupContents)
{
var fhirGroupMembershipTime = new FhirDateTime(groupMembershipTime);
if (
(member.Inactive == null ||
member.Inactive == false) &&
(member.Period?.EndElement == null ||
member.Period?.EndElement > fhirGroupMembershipTime) &&
(member.Period?.StartElement == null ||
member.Period?.StartElement < fhirGroupMembershipTime))
{
var element = _referenceToElementResolver.Resolve(member.Entity.Reference);
string id = (string)element.Children("id").First().Value;
string resourceType = element.InstanceType;
members.Add(Tuple.Create(id, resourceType));
}
}
return(members);
}
public PbsItemsResponse GetPbsItems(string Ihi, DateTime?CreatedFrom, DateTime?CreatedTo)
{
if (ApiRequestHeader == null)
{
throw new NullReferenceException("ApiRequestHeader can not be null");
}
string GetRecordListQuery = "fhir/v1.0.0/ExplanationOfBenefit";
string RangeQuery = string.Empty;
if (CreatedFrom.HasValue)
{
var DateFrom = new FhirDateTime(CreatedFrom.Value);
RangeQuery = $"&created=ge{DateFrom.Value}";
}
if (CreatedTo.HasValue)
{
var DateTo = new FhirDateTime(CreatedTo.Value);
RangeQuery += $"&created=le{DateTo.Value}";
}
GetRecordListQuery = $"{GetRecordListQuery}?patient.identifier={Ihi}{RangeQuery}&coverage.plan=PBS&_format={GetFormatString(Format)}";
_Client = new Client();
_Client.Endpoint = ServiceEndpoint.OriginalString;
HttpResponseMessage response = _Client.Get(GetRecordListQuery, this.ApiRequestHeader.Authorization, this.ApiRequestHeader.AppId, this.ApiRequestHeader.AppVersion).Result;
return(new PbsItemsResponse(response.StatusCode, response.Content.ReadAsStringAsync().Result, Format));
}
public void TestMethod1()
{
C19M.D.Gumel2006.Interfaces.ITable1 Table1 = new C19M.D.Gumel2006.Classes.Table1();
// Use StartDate, EndDate,and NumberDaysAfterStartDate from Gumel et al. (2004)
FhirDateTime startDate = new FhirDateTime(new DateTimeOffset(new DateTime(2003, 2, 23)));
FhirDateTime endDate = new FhirDateTime(new DateTimeOffset(new DateTime(2003, 9, 1)));
Func <FhirDateTime, PositiveInt> numberDaysAfterStartDate =
(x) =>
{
if (x.ToPartialDateTime().Value.ToUniversalTime().DateTime.Date >= startDate.ToPartialDateTime().Value.ToUniversalTime().DateTime.Date)
{
return(new PositiveInt((int)Math.Abs(Math.Round((x.ToPartialDateTime().Value.ToUniversalTime().DateTime.Date - startDate.ToPartialDateTime().Value.ToUniversalTime().DateTime.Date).TotalDays))));
}
else
{
return(new PositiveInt(0));
}
};
// Context
C19M.M.C.A.Gumel2006.Interfaces.Contexts.IGumel2006_Context context = new C19M.M.C.A.Gumel2006.Classes.Contexts.Gumel2006_Context(
endDate,
numberDaysAfterStartDate,
startDate,
Table1.DiseaseInducedMortalityRate,
new Hl7.Fhir.Model.FhirDecimal(0), // TODO: Change
new Hl7.Fhir.Model.FhirDecimal(10), // TODO: Change
new Hl7.Fhir.Model.FhirDecimal(0), // TODO: Change
new Hl7.Fhir.Model.FhirDecimal(4000000), // TODO: Change
new Hl7.Fhir.Model.FhirDecimal(0), // TODO: Change
Table1.DevelopmentClinicalSymptomsRate,
Table1.EffectiveContactRate,
Table1.RecoveryRate,
Table1.NaturalMortalityRate,
Table1.VaccinationCoverageRate,
Table1.RecruitmentRateSusceptibleHumans,
Table1.VaccineEfficacy);
// Export
C19M.M.C.A.Gumel2006.Interfaces.Exports.IDiseaseTransmission_Export export = new C19M.M.C.A.Gumel2006.Classes.Exports.DiseaseTransmission_Export(
context);
export.Solve();
var I = export.DayInfectedIndividuals;
var S = export.DaySusceptibleIndividuals;
var dayCumulativeDiseaseInducedDeaths = export.DayCumulativeDiseaseInducedDeaths;
foreach (var item in I)
{
System.Diagnostics.Debug.WriteLine(
item.Item2.Value.Value);
}
}
public static String ToCode(this FhirDateTime value)
{
if (value == null)
{
return("null");
}
return($"new FhirDateTime(\"{value.Value}\")");
}
public void GivenADateTime_WhenRedact_ThenDateTimeShouldBeRedacted(FhirDateTime dateTime, FhirDateTime expectedDateTime)
{
var node = ElementNode.FromElement(dateTime.ToTypedElement());
var processResult = DateTimeUtility.RedactDateTimeAndInstantNode(node, true);
Assert.Equal(expectedDateTime?.ToString() ?? null, node.Value);
Assert.True(processResult.IsRedacted);
}
public void GivenADateTime_WhenRedact_ThenDateTimeShouldBeRedacted(FhirDateTime dateTime, FhirDateTime expectedDateTime)
{
var node = ElementNode.FromElement(dateTime.ToTypedElement());
DateTimeUtility.RedactDateTimeAndInstantNode(node, true);
Assert.Equal(expectedDateTime.ToString(), node.Value);
}
public tIndexElement(
int key,
FhirDateTime value)
{
this.Key = key;
this.Value = value;
}
public void Write(String parameterName, FhirDateTime fhirDateTime)
{
BsonDocument value = new BsonDocument();
value.Add(new BsonElement("start", BsonDateTime.Create(fhirDateTime.LowerBound())));
value.Add(new BsonElement("end", BsonDateTime.Create(fhirDateTime.UpperBound())));
document.Write(parameterName, value);
}
public decimal GetElementAtAsdecimal(
FhirDateTime t_IndexElement)
{
return(this.Value
.Where(x => x.t_IndexElement.ToDateTimeOffset(TimeSpan.Zero).UtcDateTime.Date == t_IndexElement.ToDateTimeOffset(TimeSpan.Zero).UtcDateTime.Date)
.Select(x => x.Value.Value.Value)
.SingleOrDefault());
}
public void GivenADateTimeNode_WhenDateShift_DateShiftedNodeShouldBeReturn()
{
DateShiftProcessor processor = new DateShiftProcessor(dateShiftKey: "dummy", string.Empty, enablePartialDatesForRedact: true);
FhirDateTime testDateTime = new FhirDateTime("2015-02-07T13:28:17-05:00");
var node = ElementNode.FromElement(testDateTime.ToTypedElement());
processor.Process(node);
Assert.Equal("2015-01-17T00:00:00-05:00", node.Value.ToString());
}
public void GivenADateTime_WhenDateShift_ThenDateTimeShouldBeShifted(FhirDateTime dateTime, FhirDateTime minExpectedDateTime, FhirDateTime maxExpectedDateTime)
{
var node = ElementNode.FromElement(dateTime.ToTypedElement());
var processResult = DateTimeUtility.ShiftDateTimeAndInstantNode(node, Guid.NewGuid().ToString("N"), string.Empty, true);
Assert.True(minExpectedDateTime <= new FhirDateTime(node.Value.ToString()));
Assert.True(maxExpectedDateTime >= new FhirDateTime(node.Value.ToString()));
Assert.True(processResult.IsPerturbed);
}
public I_ResultElement(
FhirDateTime t_IndexElement,
FhirDecimal value)
{
this.Log = LogManager.GetLogger(System.Reflection.MethodBase.GetCurrentMethod().DeclaringType);
this.t_IndexElement = t_IndexElement;
this.Value = value;
}
