public void WriteProteinDatabase(string fastaFilePath, string name = "", string releaseDate = "")
{
if (CurrentStage != Stage.SearchSummary)
{
throw new ArgumentException("You must be in the Search Summary stage to write protein databases");
}
_writer.WriteStartElement("search_database");
_writer.WriteAttributeString("seq_type", "AA");
_writer.WriteAttributeString("local_path", fastaFilePath);
name = (string.IsNullOrEmpty(name)) ? Path.GetFileNameWithoutExtension(fastaFilePath) : name;
_writer.WriteAttributeString("database_name", name);
if (!string.IsNullOrEmpty(releaseDate))
{
_writer.WriteAttributeString("database_release_date", releaseDate);
}
int entries = FastaReader.NumberOfEntries(fastaFilePath);
_writer.WriteAttributeString("size_in_db_entries", entries.ToString());
_writer.WriteEndElement(); // search_database
}