|
public static isBioBricksSequenceValid ( LinkedList |
||
| bioBricksToCheck | LinkedList |
|
| return | bool | |
protected override DNABit produceDNABit()
{
LinkedList <BioBrick> deviceBricks = new LinkedList <BioBrick>();
string[] bricks = new string[] { promoterName, rbsName, geneName, terminatorName };
foreach (string brickName in bricks)
{
BioBrick brick = AvailableBioBricksManager.get().getBioBrickFromAll(brickName);
if (brick != null)
{
deviceBricks.AddLast(brick);
}
else
{
Logger.Log("PickableDeviceRef4Bricks::produceDNABit failed to add brick with name " + brickName + "!", Logger.Level.WARN);
}
}
if (ExpressionModule.isBioBricksSequenceValid(deviceBricks))
{
ExpressionModule deviceModule = new ExpressionModule(deviceName, deviceBricks);
LinkedList <ExpressionModule> deviceModules = new LinkedList <ExpressionModule>();
deviceModules.AddLast(deviceModule);
Device result = Device.buildDevice(deviceName, deviceModules);
return(result);
}
else
{
Logger.Log("PickableDeviceRef4Bricks::produceDNABit failed to produce DNABit - BioBrick sequence is incorrect: list=" + Logger.ToString <BioBrick>(deviceBricks), Logger.Level.WARN);
return(null);
}
}
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
// utilities
private Device getDeviceFromBricks(LinkedList <BioBrick> bricks)
{
Logger.Log("CraftZoneManager::getDeviceFromBricks(" + Logger.ToString <BioBrick>(bricks) + ")", Logger.Level.TRACE);
if (!ExpressionModule.isBioBricksSequenceValid(bricks))
{
Logger.Log("CraftZoneManager::getDeviceFromBricks invalid biobricks sequence", Logger.Level.TRACE);
return(null);
}
ExpressionModule module = new ExpressionModule("test", bricks);
LinkedList <ExpressionModule> modules = new LinkedList <ExpressionModule>();
modules.AddLast(module);
Device device = Device.buildDevice(modules);
if (device != null)
{
Logger.Log("CraftZoneManager::getDeviceFromBricks produced " + device, Logger.Level.TRACE);
}
else
{
Logger.Log("CraftZoneManager::getDeviceFromBricks device==null with bricks=" + Logger.ToString <BioBrick>(bricks)
, Logger.Level.WARN);
}
return(device);
}