private static void UpdateWittyerVariant(IWittyerSimpleVariant variant, EvaluationMode emode, bool isTruth)
{
var sample = variant.Sample;
var match = emode.Equals(EvaluationMode.Default);
variant.OverlapInfo.Sort();
switch (sample)
{
case WittyerSampleInternal simple:
UpdateWittyerVariantHelper(simple, variant, match, isTruth);
break;
case WittyerCopyNumberSample cnsample:
UpdateWittyerVariantHelper(cnsample.BaseSample, variant, match, isTruth);
break;
case WittyerGenotypedSample gtSample:
UpdateWittyerVariantHelper(gtSample.BaseSample, variant, match, isTruth);
break;
case WittyerGenotypedCopyNumberSample gtCnSample:
UpdateWittyerVariantHelper(gtCnSample.BaseSample.BaseSample, variant, match, isTruth);
break;
default:
throw new InvalidDataException(
"Not sure how we get here, you must have created some non-existed wittyer sample type, check with developer!");
}
}
internal static WittyerVcfResult Create(TruthForest truths, EvaluationMode emode)
{
var normalVariants = new List <IWittyerVariant>();
var breakendPairs = new List <IWittyerBnd>();
foreach (var variant in truths.Trees.SelectMany(gtree => gtree.Value.Values.SelectMany(v => v)))
{
UpdateWittyerVariant(variant, emode, true);
switch (variant)
{
case IWittyerVariant normal:
normalVariants.Add(normal);
break;
case IWittyerBnd bnd:
breakendPairs.Add(bnd);
break;
default:
throw new InvalidDataException(
"Not sure why there's a not supported type in query set, check with developer!");
}
}
return(new WittyerVcfResult(normalVariants.ToReadOnlyList(), breakendPairs.ToReadOnlyList(),
truths.LeftOvers.ToReadOnlyList(), truths.SampleName));
}
public void init_cyclic_spline(Vector3[] controls, int count, EvaluationMode m, int cyclic_point)
{
m_mode = m;
_cyclic = true;
Init_Spline(controls, count, m);
}
internal static WittyerVcfResult Create(QuerySet updatedQueries, EvaluationMode emode)
{
var normalVariants = new List <IWittyerVariant>();
var breakendPairs = new List <IWittyerBnd>();
foreach (var variant in updatedQueries.Query)
{
UpdateWittyerVariant(variant, emode, false);
switch (variant)
{
case IWittyerVariant normal:
normalVariants.Add(normal);
break;
case IWittyerBnd bnd:
breakendPairs.Add(bnd);
break;
default:
throw new InvalidDataException(
"Not sure why there's a not supported type in query set, check with developer!");
}
}
return(new WittyerVcfResult(normalVariants.ToReadOnlyList(), breakendPairs.ToReadOnlyList(), updatedQueries.NotSupportedVariants, updatedQueries.SampleName));
}
public void Evaluate(EvaluationMode evaluationMode, bool includeArchived = false)
{
var dataset = (evaluationMode == EvaluationMode.TESTING) ? this.TestingDataset : this.TrainingDataset;
for (var i = 0; i < this.Supercluster.Clusters.Count; i++)
{
var cluster = this.Supercluster.Clusters[i];
this.EvaluateNetworks(cluster.Networks, dataset);
}
if (includeArchived)
{
this.EvaluateNetworks(this.Supercluster.NetworkArchive, dataset);
}
var allNetworks = this.Supercluster.GetAllNetworks(true);
var bestScore = allNetworks.Max(o => o.Strength);
if (evaluationMode == EvaluationMode.TRAINING && bestScore > this.BestTrainingScore)
{
this.BestTrainingScore = bestScore;
}
else if (evaluationMode == EvaluationMode.TESTING && bestScore > this.BestTestingScore)
{
this.BestTestingScore = bestScore;
}
}
public static bool Equals(object x, object y, EvaluationMode evaluationMode)
{
var comparisonType = (evaluationMode == EvaluationMode.Strict)
? StringComparison.CurrentCulture
: StringComparison.InvariantCultureIgnoreCase;
return(string.Equals(x?.ToString(), y?.ToString(), comparisonType));
}
public static bool Contains(object x, object y, EvaluationMode evaluationMode)
{
var comparisonType = (evaluationMode == EvaluationMode.Strict)
? StringComparison.CurrentCulture
: StringComparison.InvariantCultureIgnoreCase;
return((x != null) && x.ToString().IndexOf(y?.ToString() ?? string.Empty, comparisonType) >= 0);
}
private WittyerVcfReader([NotNull] IVcfReader vcfReader, [NotNull] IReadOnlyDictionary <WittyerType, InputSpec> inputSpec,
IReadOnlyList <IVcfVariant> baseVariants, EvaluationMode mode)
{
_vcfReader = vcfReader;
_inputSpec = inputSpec;
_baseVariants = baseVariants;
_mode = mode;
}
/*
* The possible parameters are:
* key - in this case find the attribute
* if the attribute found is a list
* if only one value from the list is requested
* return the value according to an index
* else return the list
* else (the value is not a list) return the value
*/
/**********************************************************************************************//**
* Evaluate parameter.
*
* \author Ilan Hindy
* \date 29/09/2016
*
* \exception EvaluationException Thrown when an Evaluation error condition occurs.
*
* \param evaluationMode The evaluation mode.
* \param network The network.
* \param process The process.
* \param channel The channel.
* \param message The message.
* \param parameter The parameter.
*
* \return An Attribute.
* .
**************************************************************************************************/
private Attribute EvaluateParameter(EvaluationMode evaluationMode, BaseNetwork network, BaseProcess process, BaseChannel channel, BaseMessage message, Attribute parameter)
{
if (parameter.Value.GetType().IsEnum)
{
if (!NetworkElementExist(network, process, channel, message))
{
return(new Attribute()
{
Value = false
});
}
Attribute attribute = FindAttribute(network, process, channel, message, parameter.Value);
if (attribute == null)
{
string typeOfHostingElementStr = TypesUtility.GetKeyToString(or[brp.ork.HostingElementType]);
throw new EvaluationException("Could not find attribute " + TypesUtility.GetKeyToString(parameter.Value) + " In element of type " + typeOfHostingElementStr);
}
else
{
if (Attribute.GetValueCategory(attribute) == Attribute.AttributeCategory.ListOfAttributes)
{
if (or[brp.ork.ListParameterOneOrAll] == ListParameterOneOrAll.One)
{
object[] elements = TypesUtility.InvokeMethodOfList(attribute.Value, "ToArray", new object[0], true);
int requestedIndex = or[brp.ork.IndexInList];
if (elements.Count() <= requestedIndex)
{
throw new EvaluationException("The index requested : " + requestedIndex.ToString() + " is larger or equal to the number of elements in the list : " + elements.Count());
}
else
{
if (Attribute.GetValueCategory(attribute) == Attribute.AttributeCategory.ListOfAttributes)
{
return((Attribute)elements[requestedIndex]);
}
else
{
return(new Attribute()
{
Value = elements[requestedIndex]
});
}
}
}
}
return(attribute);
}
}
if (parameter.Value.GetType().Equals(typeof(Breakpoint)))
{
return(new Attribute()
{
Value = parameter.Value.Evaluate(evaluationMode, network, process, channel, message)
});
}
return(parameter);
}
internal static object GetTypedValue(Type pType, object val, EvaluationMode mode)
{
object typedValue = val;
var converter = TypeDescriptor.GetConverter(pType);
try
{
if (val?.GetType().Equals(pType) ?? true)
{
return(val);
}
else if (converter.CanConvertFrom(val.GetType()))
{
typedValue = converter.ConvertFrom(null, CultureInfo.InvariantCulture, val);
}
else if (pType.IsPrimitive)
{
typedValue = Convert.ChangeType(val, pType);
}
else if (!pType.IsAbstract)
{
var method = (MethodBase)pType.GetMethod("Parse", BindingFlags.Static | BindingFlags.Public, null, new[] { val.GetType() }, null);
if (method == null)
{
method = pType.GetConstructor(new[] { val.GetType() });
}
if (method?.IsConstructor ?? false)
{
typedValue = Activator.CreateInstance(pType, new[] { val });
}
else
{
typedValue = method?.Invoke(null, new[] { val });
if (typedValue == null)
{
if (typeof(string) == pType)
{
typedValue = val.ToString();
}
else
{
typedValue = val;
}
}
}
}
}
catch
{
if (mode == EvaluationMode.Strict)
{
throw;
}
typedValue = GetDefaultValue(pType);
}
return(typedValue);
}
/// <summary>
/// Rule arg class constructor to abstract the creation of rules
/// </summary>
/// <param name="ruleId"></param>
/// <param name="operands"></param>
/// <param name="childRules"></param>
/// <param name="logicType"></param>
/// <param name="mode"></param>
/// <param name="failureCode"></param>
public RuleArguments(Guid ruleId, IReadOnlyList<IOperand> operands, IReadOnlyList<IRule> childRules, LogicType logicType, EvaluationMode mode, string failureCode)
{
RuleId = ruleId;
Operands = operands;
ChildRules = childRules;
LogicType = logicType;
Mode = mode;
FailureCode = failureCode;
}
public ObjectAttributeEvaluation(EvaluationMode lEvaluationMode, int Min, int Max)
{
cEvaluationMode = lEvaluationMode;
if (Min != Max)
{
MinCount = Min;
MaxCount = Max;
}
SetAttribueType(AttributeType.Evalution);
EvaluateFirst();
}
private WittyerSettings([NotNull] DirectoryInfo outputDirectory, [NotNull] FileInfo truthVcf, FileInfo queryVcf,
[NotNull] IReadOnlyCollection <ISamplePair> samplePairs, EvaluationMode mode,
[NotNull] IReadOnlyDictionary <WittyerType, InputSpec> inputSpecs)
{
OutputDirectory = outputDirectory;
TruthVcf = truthVcf;
QueryVcf = queryVcf;
SamplePairs = samplePairs;
Mode = mode;
InputSpecs = inputSpecs;
}
internal static void HandleException(Exception ex, EvaluationMode evaluationMode)
{
if ((evaluationMode & EvaluationMode.Strict) == EvaluationMode.Strict)
{
if (ex.InnerException != null)
{
throw ex.InnerException;
}
;
throw ex;
}
}
public void SetMode(int newmode)
{
mode = (EvaluationMode)newmode;
if (newmode == 1)
{
// ballCtrl.Randomize();
}
if (newmode == 3)
{
// manualDiskCtrl.SetManualControl(true);
//ballCtrl.Randomize();
}
}
/// <summary>
/// Rule arg class constructor to abstract the creation of rules
/// </summary>
/// <param name="ruleId"></param>
/// <param name="dataType"></param>
/// <param name="description"></param>
/// <param name="operands"></param>
/// <param name="childRules"></param>
/// <param name="logicType"></param>
/// <param name="mode"></param>
/// <param name="failureCode"></param>
/// <param name="listProxy"></param>
/// <param name="tenantId"></param>
public RuleArguments(Guid ruleId, DataType dataType, string description, IReadOnlyList <IOperand> operands, IReadOnlyList <IRule> childRules,
LogicType logicType, EvaluationMode mode, string failureCode, IListProxy listProxy, string tenantId)
{
RuleId = ruleId;
DataType = dataType;
Description = description;
Operands = operands;
ChildRules = childRules;
LogicType = logicType;
Mode = mode;
FailureCode = failureCode;
ListProxy = listProxy;
TenantId = tenantId;
}
/// <inheritdoc />
public void Finalize(WitDecision falseDecision, EvaluationMode mode,
GenomeIntervalTree <IContigAndInterval> includedRegions)
{
bool?isIncluded = null;
if (includedRegions != null)
{
isIncluded = includedRegions.TryGetValue(OriginalVariant.Contig, out var tree) &&
tree.Search(CiPosInterval).Any() && // or there's overlap in bed regions
(ReferenceEquals(OriginalVariant, EndOriginalVariant) ||
Equals(OriginalVariant.Contig, EndOriginalVariant.Contig) ||
includedRegions.TryGetValue(EndOriginalVariant.Contig, out tree) &&
tree.Search(CiEndInterval).Any()); // or end overlaps.
}
WittyerVariantInternal.Finalize(this, _overlapInfo, falseDecision, mode, isIncluded);
}
void IXmlSerializable.WriteXml(XmlWriter writer)
{
if (DataType != 0)
{
writer.WriteAttributeString("DataType", DataType.ToString());
}
if (EvaluationMode != 0)
{
writer.WriteAttributeString("EvaluationMode", EvaluationMode.ToString());
}
if (Value.Length > 0)
{
if (Value.Trim().Length == 0)
{
writer.WriteAttributeString("xml", "space", null, "preserve");
}
writer.WriteString(Value);
}
}
public void Init_Spline(Vector3[] controls, int count, EvaluationMode m)
{
m_mode = m;
_cyclic = false;
switch (m_mode)
{
case EvaluationMode.Linear:
case EvaluationMode.Catmullrom:
InitCatmullRom(controls, count, _cyclic, 0);
break;
case EvaluationMode.Bezier3_Unused:
InitBezier3(controls, count, _cyclic, 0);
break;
default:
break;
}
}
public void Init_Spline(Vector3[] controls, int count, EvaluationMode m, int cyclic_point = 0)
{
m_mode = m;
cyclic = cyclic_point != 0;
switch (m_mode)
{
case EvaluationMode.Linear:
case EvaluationMode.Catmullrom:
InitCatmullRom(controls, count, cyclic, cyclic_point);
break;
case EvaluationMode.Bezier3_Unused:
InitBezier3(controls, count, cyclic, cyclic_point);
break;
default:
break;
}
}
internal static object caller(Assembly assembly, string myclass, string mymethod, object[] parameters, bool convertParameters, JUSTContext context)
{
Type type = assembly?.GetType(myclass) ?? Type.GetType(myclass);
MethodInfo methodInfo = type.GetTypeInfo().GetMethod(mymethod);
var instance = !methodInfo.IsStatic ? Activator.CreateInstance(type) : null;
try
{
return(InvokeCustomMethod(methodInfo, parameters, convertParameters, context));
}
catch
{
EvaluationMode mode = context.EvaluationMode;
if (mode == EvaluationMode.Strict)
{
throw;
}
return(GetDefaultValue(methodInfo.ReturnType));
}
}
/// <summary>
/// Initialize the experiment with some optional XML configuration data.
/// </summary>
public void Initialize(string name, XmlElement xmlConfig)
{
T GetValueAsEnum <T>(string e)
{
string r = XmlUtils.GetValueAsString(xmlConfig, e);
return((T)System.Enum.Parse(typeof(T), r));
}
_name = name;
_populationSize = XmlUtils.GetValueAsInt(xmlConfig, "PopulationSize");
_specieCount = XmlUtils.GetValueAsInt(xmlConfig, "SpecieCount");
_activationScheme = ExperimentUtils.CreateActivationScheme(xmlConfig, "Activation");
_complexityRegulationStr = XmlUtils.TryGetValueAsString(xmlConfig, "ComplexityRegulationStrategy");
_complexityThreshold = XmlUtils.TryGetValueAsInt(xmlConfig, "ComplexityThreshold");
_numberOfGames = XmlUtils.GetValueAsInt(xmlConfig, "IPDGames");
int seed = XmlUtils.GetValueAsInt(xmlConfig, "RandomPlayerSeed");
int randoms = XmlUtils.GetValueAsInt(xmlConfig, "RandomPlayerCount");
string os = XmlUtils.TryGetValueAsString(xmlConfig, "StaticOpponents");
_opponentPool = CreatePool(seed, randoms, (os == null) ? new Opponent[0] : System.Array.ConvertAll(os.Split(','), (string o) => { return((Opponent)System.Enum.Parse(typeof(Opponent), o, true)); }));
_evaluationLimit = (ulong)XmlUtils.GetValueAsInt(xmlConfig, "EvaluationLimit");
_evaluationMode = GetValueAsEnum <EvaluationMode>("EvaluationMode");
_noveltyMetric = GetValueAsEnum <NoveltyMetric>("NoveltyMetric");
_noveltyK = XmlUtils.GetValueAsInt(xmlConfig, "NoveltyK");
_randomRobustCheck = XmlUtils.GetValueAsInt(xmlConfig, "RandomRobustCheck");
_pastInputReach = XmlUtils.GetValueAsInt(xmlConfig, "PastInputReach");
_description = XmlUtils.TryGetValueAsString(xmlConfig, "Description");
_parallelOptions = ExperimentUtils.ReadParallelOptions(xmlConfig);
_eaParams = new NeatEvolutionAlgorithmParameters();
_eaParams.SpecieCount = _specieCount;
_neatGenomeParams = new NeatGenomeParameters();
_neatGenomeParams.FeedforwardOnly = _activationScheme.AcyclicNetwork;
}
/// <inheritdoc />
public void Finalize(WitDecision falseDecision, EvaluationMode mode,
GenomeIntervalTree <IContigAndInterval> includedRegions)
{
bool?isIncluded = null;
if (includedRegions != null)
{
isIncluded = false;
if (includedRegions.TryGetValue(Contig, out var tree))
{
var startPosition = CiPosInterval.Stop - 1;
var endPosition = CiEndInterval.Start;
if (startPosition >= endPosition)
{
// means cipos or ciend goes past each other
// so any overlap with Start to Stop should mean included.
isIncluded = tree.Search(this).Any();
}
else
{
// ReSharper disable once LoopCanBeConvertedToQuery // prevent closure allocation
foreach (var overlap in tree.Search(startPosition))
{
if (!overlap.Contains(endPosition))
{
continue;
}
isIncluded = true;
break;
}
}
}
}
Finalize(this, _overlapInfo, falseDecision, mode, isIncluded);
}
public abstract AspNetCore.ReportingServices.ReportIntermediateFormat.ExpressionInfo ParseExpression(string expression, ExpressionContext context, EvaluationMode evaluationMode);
public static WittyerVcfReader Create([NotNull] IVcfReader vcfReader,
[NotNull] IReadOnlyDictionary <WittyerType, InputSpec> inputSpec, EvaluationMode mode,
[CanBeNull] string sampleName)
{
if (inputSpec.SelectMany(kvp => kvp.Value.ExcludedFilters.Concat(kvp.Value.IncludedFilters)).Any(string.IsNullOrWhiteSpace))
{
throw new InvalidDataException("Passed in empty or whitespace as a filter!");
}
var successVariants = new List <IVcfVariant>();
var exceptions = new List <Exception>();
foreach (var item in vcfReader.GetAllItems())
{
item.DoOnSuccess(v =>
{
var variant = v;
if (v.Samples.Count > 0)
{
var sample = sampleName == null ? v.Samples[0] : v.Samples[sampleName];
var sampleDict = SampleDictionaries.CreateBuilder().AddSample(sample.SampleName)
.MoveOnToDictionaries();
sample.SampleDictionary.ForEach(kvp =>
sampleDict.SetSampleField(sample.SampleName, (kvp.Key, kvp.Value)));
variant = v.ToBuilder().SetSamples(sampleDict.Build()).Build();
}
successVariants.Add(variant);
}).DoOnFailure(e => exceptions.Add(e));
}
if (exceptions.Count == 0)
{
return(new WittyerVcfReader(vcfReader, inputSpec, successVariants.AsReadOnly(), mode));
}
var msg = exceptions.Take(5).Select(x => x.Message)
.StringJoin("\n");
throw new InvalidDataException
($"Found {exceptions.Count} variants cannot be parsed in {vcfReader.FileSource.FullName}: first 5 or less:\n {msg}");
}
internal abstract Microsoft.ReportingServices.ReportIntermediateFormat.ExpressionInfo ParseExpression(string expression, ExpressionContext context, EvaluationMode evaluationMode);
internal abstract Microsoft.ReportingServices.ReportIntermediateFormat.ExpressionInfo ParseExpression(string expression, ExpressionContext context, EvaluationMode evaluationMode, out bool userCollectionReferenced);
internal static void Finalize([NotNull] IMutableWittyerSimpleVariant variant,
[NotNull] List <OverlapAnnotation> annotations, WitDecision falseDecision, EvaluationMode mode,
bool?isIncluded)
{
annotations.Sort();
WittyerSampleInternal unwrappedSample;
switch (variant.Sample)
{
case WittyerSampleInternal simple:
unwrappedSample = simple;
break;
case WittyerCopyNumberSample cnSample:
unwrappedSample = cnSample.BaseSample;
break;
case WittyerGenotypedSample gtSample:
unwrappedSample = gtSample.BaseSample;
break;
case WittyerGenotypedCopyNumberSample gtCnSample:
unwrappedSample = gtCnSample.BaseSample.BaseSample;
break;
default:
throw new InvalidDataException(
"Not sure how we get here, you must have created some non-existed wittyer sample type, check with developer!");
}
// expected results:
// isIncluded == null means no bedRegion, so everything is normal.
// isIncluded != null means bedRegion, so if false, override the results as such:
// Wit = NotAssessed.
// Why[0] if Unset = OutsideBedRegion
unwrappedSample.What = ImmutableList <MatchEnum> .Empty;
unwrappedSample.Why = ImmutableList <FailedReason> .Empty;
var isTp = false;
for (var i = 0; i < variant.OverlapInfo.Count; i++)
{
var what = variant.OverlapInfo[i].What;
unwrappedSample.What = unwrappedSample.What.Add(what);
isTp = isTp ||
what == MatchEnum.AlleleAndGenotypeMatch ||
(mode == EvaluationMode.SimpleCounting || mode == EvaluationMode.CrossTypeAndSimpleCounting) &&
what == MatchEnum.AlleleMatch;
var why = variant.OverlapInfo[i].Why;
if (why == FailedReason.Unset)
{
why = i == 0 && isIncluded == false
? FailedReason.OutsideBedRegion
: what == MatchEnum.Unmatched
? FailedReason.NoOverlap
: FailedReason.Other;
}
unwrappedSample.Why = unwrappedSample.Why.Add(why);
}
if (unwrappedSample.What.Count == 0)
{
unwrappedSample.What = EmptyWhat;
}
if (unwrappedSample.Why.Count == 0)
{
unwrappedSample.Why = isIncluded == false ? EmptyOutsideBedWhy : isTp ? EmptyTrueWhy : EmptyFalseWhy;
}
unwrappedSample.Wit = isIncluded == null || isIncluded.Value
? isTp
? WitDecision.TruePositive
: falseDecision
: WitDecision.NotAssessed;
}
public ReportExpression(string value)
{
m_value = value;
m_dataType = DataTypes.String;
m_evaluationMode = EvaluationMode.Auto;
}
public ReportExpression(string value, EvaluationMode evaluationMode)
{
m_value = value;
m_dataType = DataTypes.String;
m_evaluationMode = evaluationMode;
}
internal static object GetTypedValue(JTokenType jType, object val, EvaluationMode mode)
{
return(GetTypedValue(GetType(jType), val, mode));
}
public abstract AspNetCore.ReportingServices.ReportIntermediateFormat.ExpressionInfo ParseExpression(string expression, ExpressionContext context, EvaluationMode evaluationMode, out bool userCollectionReferenced);
/// <summary>
/// Evaluates the expression component.
/// </summary>
/// <param name="component">The component.</param>
/// <param name="mode">The mode.</param>
/// <returns>The result of the evaluated expression component.</returns>
private object EvaluateExpressionComponent(string component, EvaluationMode mode)
{
Logger.Instance.WriteMethodEntry(EventIdentifier.ExpressionEvaluatorEvaluateExpressionComponent, "Component: '{0}'. Evaluation Mode: '{1}'.", component, mode);
object returnValue = null;
try
{
ParameterType type = DetermineParameterType(component);
if (mode == EvaluationMode.Parse)
{
// When performing a parse,
// the function should only return null when the component is valid
// Exceptions will be thrown otherwise to indicate invalidity
switch (type)
{
case ParameterType.Lookup:
// Load the lookup to the cache
if (!this.lookupCache.ContainsKey(component))
{
this.lookupCache.Add(component, null);
}
return null;
case ParameterType.Variable:
// Load the variable to the cache
if (!this.variableCache.ContainsKey(component))
{
this.variableCache.Add(component, null);
}
return null;
case ParameterType.Function:
// Evaluate the function to ensure its validity
return this.EvaluateFunction(component, mode);
default:
// For all other types, no further evaluation is needed
// and we can return null
return null;
}
}
// When performing a resolution,
// the function should return the resolved expression component
switch (type)
{
case ParameterType.String:
// Return the string after removing the quotation marks
returnValue = EscapeString(component);
return returnValue;
case ParameterType.Integer:
// Return the long as FIM datatype is System.Int64
returnValue = long.Parse(component, CultureInfo.InvariantCulture);
return returnValue;
case ParameterType.Boolean:
// Return the Boolean value
returnValue = bool.Parse(component);
return returnValue;
case ParameterType.Lookup:
// Check the cache for the lookup and return its value if present
if (this.lookupCache.ContainsKey(component))
{
returnValue = this.lookupCache[component];
return returnValue;
}
throw Logger.Instance.ReportError(EventIdentifier.ExpressionEvaluatorEvaluateExpressionComponentLookupCacheValidationError, new InvalidExpressionException(Messages.ExpressionEvaluator_LookupCacheValidationError, component));
case ParameterType.Variable:
// Check the cache for the variable and return its value if present
if (this.variableCache.ContainsKey(component))
{
returnValue = this.variableCache[component];
return returnValue;
}
throw Logger.Instance.ReportError(EventIdentifier.ExpressionEvaluatorEvaluateExpressionComponentVariableCacheValidationError, new InvalidExpressionException(Messages.ExpressionEvaluator_VariableCacheValidationError, component));
case ParameterType.Function:
// Pass the function off to the EvaluateFunction method for resolution
// and return the result
returnValue = this.EvaluateFunction(component, mode);
return returnValue;
default:
throw Logger.Instance.ReportError(EventIdentifier.ExpressionEvaluatorEvaluateExpressionComponentParameterTypeValidationError, new InvalidExpressionException());
}
}
finally
{
Logger.Instance.WriteMethodExit(EventIdentifier.ExpressionEvaluatorEvaluateExpressionComponent, "Component: '{0}'. Evaluation Mode: '{1}'. Return Value: '{2}'.", component, mode, returnValue);
}
}
private static PledgeRule CreateRule(List<int> indices, DataType dataType, RuleType ruleType, LogicType logicType, List<object> operands, EvaluationMode mode = EvaluationMode.Active)
{
return new PledgeRule
{
Columns = indices.Select(index => new Column {Index = index}).ToList(),
DataType = dataType,
RuleType = ruleType,
RuleId = Guid.NewGuid(),
LogicType = logicType,
Operands = operands,
Mode = mode,
Children = new List<PledgeRule>()
};
}
/// <summary>
/// Evaluates the expression.
/// </summary>
/// <param name="expression">The expression.</param>
/// <param name="mode">The mode.</param>
/// <returns>The result of the evaluated expression.</returns>
private object EvaluateExpression(string expression, EvaluationMode mode)
{
Logger.Instance.WriteMethodEntry(EventIdentifier.ExpressionEvaluatorEvaluateExpression, "Expression: '{0}'. Evaluation Mode: '{1}'.", expression, mode);
object result = null;
try
{
ArrayList components = IdentifyExpressionComponents(expression);
// If no concatenation is required, return the resolved expression
if (components.Count == 1)
{
result = this.EvaluateExpressionComponent(expression, mode);
return result;
}
// If the expression requires concatenation,
// evaluate each component and resolve, if necessary
if (mode == EvaluationMode.Parse)
{
foreach (string component in components)
{
this.EvaluateExpressionComponent(component, mode);
}
return null;
}
StringBuilder concatenated = new StringBuilder();
foreach (object value in components.Cast<string>().Select(component => this.EvaluateExpressionComponent(component, mode)).Where(value => value != null))
{
concatenated.Append(value);
}
result = concatenated.Length > 0 ? concatenated.ToString() : null;
return result;
}
finally
{
Logger.Instance.WriteMethodExit(EventIdentifier.ExpressionEvaluatorEvaluateExpression, "Expression: '{0}'. Evaluation Mode: '{1}'. Returning: '{2}'.", expression, mode, result);
}
}
private static PledgeRule CreateRule(int index, DataType dataType, RuleType ruleType, LogicType logicType, List<object> operands, EvaluationMode mode = EvaluationMode.Active)
{
return CreateRule(new List<int> {index}, dataType, ruleType, logicType, operands, mode);
}
/// <summary>
/// Evaluates the function.
/// </summary>
/// <param name="function">The function.</param>
/// <param name="mode">The mode.</param>
/// <returns>The result of the evaluated function.</returns>
private object EvaluateFunction(string function, EvaluationMode mode)
{
Logger.Instance.WriteMethodEntry(EventIdentifier.ExpressionEvaluatorEvaluateFunction, "Function: '{0}'. Evaluation Mode: '{1}'.", function, mode);
object result = null;
try
{
// Locate the opening and closing () characters for the function
// by looking for the first and last instance of each character
// This will ignore any nested functions which may be used as a parameter
int open = function.IndexOf('(');
int close = function.LastIndexOf(')');
// Break apart the function expression to identify the function name
// and parameter string (content between parentheses)
string functionName = function.Substring(0, open);
string parameterString = function.Substring(open + 1, close - open - 1);
// Create new array lists to hold the unresolved and resolved parameters for the function
// Only evaluate parameters if the parameter string is not empty, as it will
// be for functions like DateTimeNow() and Null()
ArrayList unresolvedParameters = new ArrayList();
ArrayList parameters = new ArrayList();
if (!string.IsNullOrEmpty(parameterString.Trim()))
{
// The function expression could contain nested functions with their own commas
// For example, Trim(Left(ReplaceString(attribute, "This", "That"), 8))
// Consequently, we can't assume that a split by comma returns each parameter
// We need to loop through each and determine if a parameter needs to be reassembled
// based on the positioning of ( and ) characters and quotation marks
StringBuilder reassembled = new StringBuilder();
bool openString = false;
int openFunctions = 0;
// First, make sure that there are an appropriate number of ( and ) characters
// and also make sure there is no open string in the function
foreach (char c in parameterString)
{
if (c.Equals('\"'))
{
openString = !openString;
}
if (c.Equals('(') && !openString)
{
openFunctions += 1;
}
if (c.Equals(')') && !openString)
{
openFunctions -= 1;
}
}
// If there is an open string or the number of open and close
// parantheses characters do not match, throw an exception
if (openString)
{
throw Logger.Instance.ReportError(EventIdentifier.ExpressionEvaluatorEvaluateFunctionQuotesValidationError, new InvalidFunctionFormatException(Messages.ExpressionEvaluator_FunctionParameterQuotesValidationError, functionName));
}
if (openFunctions != 0)
{
throw Logger.Instance.ReportError(EventIdentifier.ExpressionEvaluatorEvaluateFunctionParenthesisValidationError, new InvalidFunctionFormatException(Messages.ExpressionEvaluator_FunctionParameterParenthesisValidationError, functionName));
}
// Loop through each parameter fragment, split by comma,
// and determine if reassembly is required
foreach (string s in parameterString.Split(','))
{
// Count the number of ( and ) characters in the current string
// Only consider the parentheses relevent if it is not in an open string
foreach (char c in s)
{
if (c.Equals('\"'))
{
openString = !openString;
}
else if (c.Equals('(') && !openString)
{
openFunctions += 1;
}
else if (c.Equals(')') && !openString)
{
openFunctions -= 1;
}
}
// Add the string to the reassembled string builder
// and determine how to proceed based on whether or not
// we are currently reassembling parameter fragments
reassembled.Append(s);
if (openFunctions > 0 || openString)
{
reassembled.Append(",");
}
else
{
// If a parameter is not open, it either means that no
// reassembly was required or we have completed reassembly
// Either way, add the parameter to the list of unresolved parameters
// and reset the string builder
unresolvedParameters.Add(reassembled.ToString().Trim());
reassembled = new StringBuilder();
}
}
foreach (string s in unresolvedParameters)
{
Logger.Instance.WriteVerbose(EventIdentifier.ExpressionEvaluatorEvaluateFunction, "Resolving unresolved function parameter '{0}'.", s);
ParameterType type = DetermineParameterType(s);
switch (type)
{
case ParameterType.String:
// Add the string value after trimming the quotes
parameters.Add(EscapeString(s));
break;
case ParameterType.Integer:
// Add the parsed value as long as FIM datatype is System.Int64
parameters.Add(long.Parse(s, CultureInfo.InvariantCulture));
break;
case ParameterType.Boolean:
// Add the parsed Boolean value
parameters.Add(bool.Parse(s));
break;
case ParameterType.Lookup:
if (mode == EvaluationMode.Parse)
{
// For parse, add the lookup to the cache
// Mark the grammar in the parameter list by adding the appropriate enum value
if (!this.lookupCache.ContainsKey(s))
{
this.lookupCache.Add(s, null);
}
parameters.Add(ParameterType.Lookup);
}
else
{
// For resolution, pull the value from the lookup cache and
// add it to the parameter list
if (this.lookupCache.ContainsKey(s))
{
parameters.Add(this.lookupCache[s]);
}
else
{
throw Logger.Instance.ReportError(EventIdentifier.ExpressionEvaluatorEvaluateFunctionLookupCacheValidationError, new InvalidFunctionFormatException(Messages.ExpressionEvaluator_LookupCacheValidationError, s));
}
}
break;
case ParameterType.Variable:
if (mode == EvaluationMode.Parse)
{
// For parse, add the variable to the cache
// Mark the variable in the parameter list by adding the appropriate enum value
if (!this.variableCache.ContainsKey(s))
{
this.variableCache.Add(s, null);
}
parameters.Add(ParameterType.Variable);
}
else
{
// For resolution, pull the value from the variable cache and
// add it to the parameter list
if (this.variableCache.ContainsKey(s))
{
parameters.Add(this.variableCache[s]);
}
else
{
throw Logger.Instance.ReportError(EventIdentifier.ExpressionEvaluatorEvaluateFunctionVariableCacheValidationError, new InvalidFunctionFormatException(Messages.ExpressionEvaluator_VariableCacheValidationError, s));
}
}
break;
case ParameterType.Function:
if (mode == EvaluationMode.Parse)
{
// For parse, recursively evaluate the function and any nested functions
// Mark the function in the parameter list by adding the appropriate enum value
this.EvaluateFunction(s, mode);
parameters.Add(ParameterType.Function);
}
else
{
// For resolution, recursively resolve the function and any nested functions
// and add the end result to the parameter list for the current function
parameters.Add(this.EvaluateFunction(s, mode));
}
break;
case ParameterType.Expression:
if (mode == EvaluationMode.Parse)
{
// For parse, recursively evaluate the expression and any nested functions
// Mark the expression in the paramter list by adding the appropriate enum value
this.EvaluateExpression(s, mode);
parameters.Add(ParameterType.Expression);
}
else
{
// For resolution, recursively resolve the expression and any nested functions
// and add the end result to the parameter list for the current function
parameters.Add(this.EvaluateExpression(s, mode));
}
break;
default:
throw Logger.Instance.ReportError(EventIdentifier.ExpressionEvaluatorEvaluateFunctionParameterTypeValidationError, new InvalidFunctionFormatException());
}
}
}
// Special handling for EvaluateExpression() function so that the lookups in the expression to evaluate are resolved
// Assumption: the lookups used in the expression are already used in some other expressions
// e.g. Consider [//Query/Site/xUserTemplateExpression] returning IIF(Eq([//Target/Department],"HR"),"Template1","Template2")
// We want EvaluateExpression([//Query/Site/xUserTemplateExpression]).
// In this case caller activity need to ensure that [//Target/Department] is already used any other expression
// so that it's part of LookupCache.
if (functionName.Equals(ParameterType.EvaluateExpression.ToString(), StringComparison.OrdinalIgnoreCase))
{
Logger.Instance.WriteWarning(EventIdentifier.ExpressionEvaluatorEvaluateFunctionDeprecatedFunctionWarning, Messages.ExpressionFunction_DeprecatedFunctionWarning, ParameterType.EvaluateExpression.ToString(), "Resolve Dynamic Grammar capability of UpdateResources activity");
string expression = this.EvaluateExpression(parameterString, mode) as string; // so e.g. IIF(Eq([//Target/Department],"HR"),"Template1","Template2")
if (mode != EvaluationMode.Parse && !string.IsNullOrEmpty(expression))
{
// now evalaute the actual expression i.e. e.g. IIF(Eq([//Target/Department],"HR"),"Template1","Template2")
result = this.EvaluateExpression(expression, mode);
}
}
else
{
// Evaluate the function to make sure it is properly formatted,
// all required parameters are available, and parameters are of the appropriate type
// For most functions, the root value is allowed to be null to handle
// scenarios when an attribute or expression is resolved to null
// In this circumstance, an exception should not be thrown but the function should resolve to null
ExpressionFunction expressionFunction = new ExpressionFunction(functionName, parameters, mode);
result = expressionFunction.Run();
}
return result;
}
finally
{
Logger.Instance.WriteMethodExit(EventIdentifier.ExpressionEvaluatorEvaluateFunction, "Function: '{0}'. Evaluation Mode: '{1}'. Returning: '{2}'.", function, mode, result);
}
}
/// <summary>
/// ObjectAttributeEvaluation constructor.
/// </summary>
/// <param name="lEvaluationMode">Are we evaluationg biggest or smallest value?</param>
/// <param name="Min">Minimal accepted value. Default 0.</param>
/// <param name="Max">Maximal accepted value. Default int.MaxValue.</param>
public ObjectAttributeEvaluation(EvaluationMode lEvaluationMode, int Min=0, int Max=int.MaxValue)
: this()
{
cEvaluationMode = lEvaluationMode;
if (Min != Max)
{
MinValue = Min;
MaxValue = Max;
}
}