public IEnumerable <SkylineDocumentProto.Types.TransitionPeak> GetTransitionPeakProtos(MeasuredResults measuredResults)
{
if (Results == null)
{
yield break;
}
for (int replicateIndex = 0; replicateIndex < Results.Count; replicateIndex++)
{
var replicateResults = Results[replicateIndex];
if (replicateResults.IsEmpty)
{
continue;
}
foreach (var transitionChromInfo in replicateResults)
{
if (transitionChromInfo == null)
{
continue;
}
var transitionPeak = new SkylineDocumentProto.Types.TransitionPeak();
transitionPeak.OptimizationStep = transitionChromInfo.OptimizationStep;
if (null != transitionChromInfo.Annotations)
{
transitionPeak.Annotations = transitionChromInfo.Annotations.ToProtoAnnotations();
}
transitionPeak.ReplicateIndex = replicateIndex;
transitionPeak.FileIndexInReplicate = measuredResults.Chromatograms[replicateIndex].IndexOfId(transitionChromInfo.FileId);
transitionPeak.MassError = DataValues.ToOptional(transitionChromInfo.MassError);
transitionPeak.RetentionTime = transitionChromInfo.RetentionTime;
transitionPeak.StartRetentionTime = transitionChromInfo.StartRetentionTime;
transitionPeak.EndRetentionTime = transitionChromInfo.EndRetentionTime;
transitionPeak.IonMobility = DataValues.ToOptional(transitionChromInfo.IonMobility.IonMobility.Mobility);
transitionPeak.IonMobilityWindow = DataValues.ToOptional(transitionChromInfo.IonMobility.IonMobilityExtractionWindowWidth);
transitionPeak.Area = transitionChromInfo.Area;
transitionPeak.BackgroundArea = transitionChromInfo.BackgroundArea;
transitionPeak.Height = transitionChromInfo.Height;
transitionPeak.Fwhm = transitionChromInfo.Fwhm;
transitionPeak.IsFwhmDegenerate = transitionChromInfo.IsFwhmDegenerate;
transitionPeak.Truncated = DataValues.ToOptional(transitionChromInfo.IsTruncated);
transitionPeak.UserSet = DataValues.ToUserSet(transitionChromInfo.UserSet);
transitionPeak.ForcedIntegration = transitionChromInfo.IsForcedIntegration;
switch (transitionChromInfo.Identified)
{
case PeakIdentification.ALIGNED:
transitionPeak.Identified = SkylineDocumentProto.Types.PeakIdentification.Aligned;
break;
case PeakIdentification.FALSE:
transitionPeak.Identified = SkylineDocumentProto.Types.PeakIdentification.False;
break;
case PeakIdentification.TRUE:
transitionPeak.Identified = SkylineDocumentProto.Types.PeakIdentification.True;
break;
}
transitionPeak.Rank = transitionChromInfo.Rank;
transitionPeak.RankByLevel = transitionChromInfo.RankByLevel;
transitionPeak.PointsAcrossPeak = DataValues.ToOptional(transitionChromInfo.PointsAcrossPeak);
yield return(transitionPeak);
}
}
}
