//
public void Start()
{
Debug.Log("DNAPanelController.Start()");
DNA_Model = DNAModel.Instance; //get the DNA Model.
key = DNA_Model.niceName["Rattus norvegicus"];
seqLength = DNA_Model.data[key][1].Length;
textureY = seqLength / textureX;
numRows = 24;
Debug.Log("numRows: " + numRows + " seqLength: " + seqLength + " textureX: " + textureX);
//Load UIs
DNAUI = GameObject.Find("CursorRenderers/Look/DNA_Letter_UI");
DNAUI.SetActive(false);
RightIndexUI = GameObject.Find("CursorRenderers/RightIndex/DNA_Letter_UI");
RightIndexUI.SetActive(false);
RightIndexSelection = GameObject.Find("CursorRenderers/RightIndex/HoverOpaqueCursorArcRenderer-Default");
// DNA_Model.readFile(Application.dataPath + "/StreamingAssets/Gria2Data/1L2Y_nuc.fasta");
//figure out where the user is looking and pointing.
HoverLookCursor = Look.GetComponent <HoverCursorFollower>();
HoverRightIndexTransform = RightIndex.transform;
//subscribe updateUV method to UVCoordChangedEvent.
UVCoordChangedEvent += updateRightIndexUV;
// UVCoordChangedEvent += updateLookUV;
NiceNameChangedEvent += updateNiceNameKey;
Debug.Log("added UVCoordChangedEvent events");
}
//public getXPeptide() { ...@todo } not really sure what this method is planned to be.
//niceName: rattus, mus musculus, etc.
//int pos: the position we are interested in
//Nuc n : whether it's A|T|C|G
//Seq type: DNA or RNA. shouldn't be AA.
//returns the residue number of the 3d protein to which the Nuc n int pos refers.
//everything is aligned with respect to Rattus nrovegicus
//what kind of output are we trying to get?
// position => % consensus as float, List<string> agree, List<string> disagree
// consensus class.
// public Consensus align(List<string> niceName, Seq type) {
// }
// //DNA, at certain position ==> RNA or AA at another position.
// public Consensus crossAlign(string niceName, Seq inSeqType, Seq outSeqType) {
// }
private DNAModel registerDNAModel()
{
if (dna == null) //guarantees instance is only set once.
{
dna = DNAModel.Instance;
}
// niceNameDNA = dna.niceName;
Debug.Log("SeqModel: registered DNA.");
return(dna);
}
