public void TestI_Q_KMeansInnerAPIWithDataFrame()
{
var methodName = System.Reflection.MethodBase.GetCurrentMethod().Name;
var outModelFilePath = FileHelper.GetOutputFile("outModelFilePath.zip", methodName);
var iris = FileHelper.GetTestFile("iris.txt");
using (var env = new ConsoleEnvironment(conc: 1))
{
ComponentHelper.AddStandardComponents(env);
var df = Scikit.ML.DataManipulation.DataFrameIO.ReadCsv(iris, sep: '\t', dtypes: new ColumnType[] { NumberType.R4 });
var conc = env.CreateTransform("Concat{col=Feature:Sepal_length,Sepal_width}", df);
var roleMap = env.CreateExamples(conc, "Feature", label: "Label");
var trainer = CreateTrainer(env, "km");
IPredictor model;
using (var ch = env.Start("test"))
model = TrainUtils.Train(env, ch, roleMap, trainer, null, 0);
using (var ch = env.Start("Save"))
using (var fs = File.Create(outModelFilePath))
TrainUtils.SaveModel(env, ch, fs, model, roleMap);
Predictor pred;
using (var fs = File.OpenRead(outModelFilePath))
pred = env.LoadPredictorOrNull(fs);
#pragma warning disable CS0618
var scorer = ScoreUtils.GetScorer(pred.GetPredictorObject() as IPredictor, roleMap, env, null);
#pragma warning restore CS0618
var dfout = Scikit.ML.DataManipulation.DataFrameIO.ReadView(scorer);
Assert.AreEqual(dfout.Shape, new Tuple <int, int>(150, 13));
}
}
public void LdaWorkout()
{
var env = new ConsoleEnvironment(seed: 42, conc: 1);
string sentimentDataPath = GetDataPath("wikipedia-detox-250-line-data.tsv");
var data = TextLoader.CreateReader(env, ctx => (
label: ctx.LoadBool(0),
text: ctx.LoadText(1)), hasHeader: true)
.Read(sentimentDataPath);
var invalidData = TextLoader.CreateReader(env, ctx => (
label: ctx.LoadBool(0),
text: ctx.LoadFloat(1)), hasHeader: true)
.Read(sentimentDataPath);
var est = new WordBagEstimator(env, "text", "bag_of_words").
Append(new LdaEstimator(env, "bag_of_words", "topics", 10, advancedSettings: s => {
s.NumIterations = 10;
s.ResetRandomGenerator = true;
}));
// The following call fails because of the following issue
// https://github.com/dotnet/machinelearning/issues/969
// TestEstimatorCore(est, data.AsDynamic, invalidInput: invalidData.AsDynamic);
var outputPath = GetOutputPath("Text", "ldatopics.tsv");
using (var ch = env.Start("save"))
{
var saver = new TextSaver(env, new TextSaver.Arguments {
Silent = true, OutputHeader = false, Dense = true
});
IDataView savedData = TakeFilter.Create(env, est.Fit(data.AsDynamic).Transform(data.AsDynamic), 4);
savedData = ColumnSelectingTransformer.CreateKeep(env, savedData, new[] { "topics" });
using (var fs = File.Create(outputPath))
DataSaverUtils.SaveDataView(ch, saver, savedData, fs, keepHidden: true);
Assert.Equal(10, (savedData.Schema.GetColumnType(0) as VectorType)?.Size);
}
// Diabling this check due to the following issue with consitency of output.
// `seed` specified in ConsoleEnvironment has no effect.
// https://github.com/dotnet/machinelearning/issues/1004
// On single box, setting `s.ResetRandomGenerator = true` works but fails on build server
// CheckEquality("Text", "ldatopics.tsv");
Done();
}
public void TestPcaEstimator()
{
var data = TextLoader.CreateReader(_env,
c => (label: c.LoadFloat(11), features: c.LoadFloat(0, 10)),
separator: ';', hasHeader: true)
.Read(_dataSource);
var est = new PcaEstimator(_env, "features", "pca", rank: 5, seed: 1);
var outputPath = GetOutputPath("PCA", "pca.tsv");
using (var ch = _env.Start("save"))
{
IDataView savedData = TakeFilter.Create(_env, est.Fit(data.AsDynamic).Transform(data.AsDynamic), 4);
savedData = new ChooseColumnsTransform(_env, savedData, "pca");
using (var fs = File.Create(outputPath))
DataSaverUtils.SaveDataView(ch, _saver, savedData, fs, keepHidden: true);
}
CheckEquality("PCA", "pca.tsv", digitsOfPrecision: 4);
Done();
}
public void PcaWorkout()
{
var env = new ConsoleEnvironment(seed: 1, conc: 1);
string dataSource = GetDataPath("generated_regression_dataset.csv");
var data = TextLoader.CreateReader(env,
c => (label: c.LoadFloat(11), features: c.LoadFloat(0, 10)),
separator: ';', hasHeader: true)
.Read(new MultiFileSource(dataSource));
var invalidData = TextLoader.CreateReader(env,
c => (label: c.LoadFloat(11), features: c.LoadText(0, 10)),
separator: ';', hasHeader: true)
.Read(new MultiFileSource(dataSource));
var est = new PcaEstimator(env, "features", "pca", rank: 5, advancedSettings: s => {
s.Seed = 1;
});
// The following call fails because of the following issue
// https://github.com/dotnet/machinelearning/issues/969
// TestEstimatorCore(est, data.AsDynamic, invalidInput: invalidData.AsDynamic);
var outputPath = GetOutputPath("PCA", "pca.tsv");
using (var ch = env.Start("save"))
{
var saver = new TextSaver(env, new TextSaver.Arguments {
Silent = true, OutputHeader = false
});
IDataView savedData = TakeFilter.Create(env, est.Fit(data.AsDynamic).Transform(data.AsDynamic), 4);
savedData = new ChooseColumnsTransform(env, savedData, "pca");
using (var fs = File.Create(outputPath))
DataSaverUtils.SaveDataView(ch, saver, savedData, fs, keepHidden: true);
}
CheckEquality("PCA", "pca.tsv");
Done();
}
public void TestBackAndForthConversionWithoutAlphaNoInterleaveNoOffset()
{
using (var env = new ConsoleEnvironment())
{
var imageHeight = 100;
var imageWidth = 130;
var dataFile = GetDataPath("images/images.tsv");
var imageFolder = Path.GetDirectoryName(dataFile);
var data = TextLoader.Create(env, new TextLoader.Arguments()
{
Column = new[]
{
new TextLoader.Column("ImagePath", DataKind.TX, 0),
new TextLoader.Column("Name", DataKind.TX, 1),
}
}, new MultiFileSource(dataFile));
var images = ImageLoaderTransform.Create(env, new ImageLoaderTransform.Arguments()
{
Column = new ImageLoaderTransform.Column[1]
{
new ImageLoaderTransform.Column()
{
Source = "ImagePath", Name = "ImageReal"
}
},
ImageFolder = imageFolder
}, data);
var cropped = ImageResizerTransform.Create(env, new ImageResizerTransform.Arguments()
{
Column = new ImageResizerTransform.Column[1] {
new ImageResizerTransform.Column()
{
Source = "ImageReal", Name = "ImageCropped", ImageHeight = imageHeight, ImageWidth = imageWidth, Resizing = ImageResizerTransform.ResizingKind.IsoCrop
}
}
}, images);
var pixels = ImagePixelExtractorTransform.Create(env, new ImagePixelExtractorTransform.Arguments()
{
InterleaveArgb = false,
Column = new ImagePixelExtractorTransform.Column[1] {
new ImagePixelExtractorTransform.Column()
{
Source = "ImageCropped", Name = "ImagePixels", UseAlpha = false
}
}
}, cropped);
IDataView backToBitmaps = new VectorToImageTransform(env, new VectorToImageTransform.Arguments()
{
InterleaveArgb = false,
Column = new VectorToImageTransform.Column[1] {
new VectorToImageTransform.Column()
{
Source = "ImagePixels", Name = "ImageRestored", ImageHeight = imageHeight, ImageWidth = imageWidth, ContainsAlpha = false
}
}
}, pixels);
var fname = nameof(TestBackAndForthConversionWithoutAlphaNoInterleaveNoOffset) + "_model.zip";
var fh = env.CreateOutputFile(fname);
using (var ch = env.Start("save"))
TrainUtils.SaveModel(env, ch, fh, null, new RoleMappedData(backToBitmaps));
backToBitmaps = ModelFileUtils.LoadPipeline(env, fh.OpenReadStream(), new MultiFileSource(dataFile));
DeleteOutputPath(fname);
backToBitmaps.Schema.TryGetColumnIndex("ImageRestored", out int bitmapColumn);
backToBitmaps.Schema.TryGetColumnIndex("ImageCropped", out int cropBitmapColumn);
using (var cursor = backToBitmaps.GetRowCursor((x) => true))
{
var bitmapGetter = cursor.GetGetter <Bitmap>(bitmapColumn);
Bitmap restoredBitmap = default;
var bitmapCropGetter = cursor.GetGetter <Bitmap>(cropBitmapColumn);
Bitmap croppedBitmap = default;
while (cursor.MoveNext())
{
bitmapGetter(ref restoredBitmap);
Assert.NotNull(restoredBitmap);
bitmapCropGetter(ref croppedBitmap);
Assert.NotNull(croppedBitmap);
for (int x = 0; x < imageWidth; x++)
{
for (int y = 0; y < imageHeight; y++)
{
var c = croppedBitmap.GetPixel(x, y);
var r = restoredBitmap.GetPixel(x, y);
Assert.True(c.R == r.R && c.G == r.G && c.B == r.B);
}
}
}
}
}
Done();
}
public void TestGreyscaleTransformImages()
{
using (var env = new ConsoleEnvironment())
{
var imageHeight = 150;
var imageWidth = 100;
var dataFile = GetDataPath("images/images.tsv");
var imageFolder = Path.GetDirectoryName(dataFile);
var data = TextLoader.Create(env, new TextLoader.Arguments()
{
Column = new[]
{
new TextLoader.Column("ImagePath", DataKind.TX, 0),
new TextLoader.Column("Name", DataKind.TX, 1),
}
}, new MultiFileSource(dataFile));
var images = ImageLoaderTransform.Create(env, new ImageLoaderTransform.Arguments()
{
Column = new ImageLoaderTransform.Column[1]
{
new ImageLoaderTransform.Column()
{
Source = "ImagePath", Name = "ImageReal"
}
},
ImageFolder = imageFolder
}, data);
var cropped = ImageResizerTransform.Create(env, new ImageResizerTransform.Arguments()
{
Column = new ImageResizerTransform.Column[1] {
new ImageResizerTransform.Column()
{
Name = "ImageCropped", Source = "ImageReal", ImageHeight = imageHeight, ImageWidth = imageWidth, Resizing = ImageResizerTransform.ResizingKind.IsoCrop
}
}
}, images);
IDataView grey = ImageGrayscaleTransform.Create(env, new ImageGrayscaleTransform.Arguments()
{
Column = new ImageGrayscaleTransform.Column[1] {
new ImageGrayscaleTransform.Column()
{
Name = "ImageGrey", Source = "ImageCropped"
}
}
}, cropped);
var fname = nameof(TestGreyscaleTransformImages) + "_model.zip";
var fh = env.CreateOutputFile(fname);
using (var ch = env.Start("save"))
TrainUtils.SaveModel(env, ch, fh, null, new RoleMappedData(grey));
grey = ModelFileUtils.LoadPipeline(env, fh.OpenReadStream(), new MultiFileSource(dataFile));
DeleteOutputPath(fname);
grey.Schema.TryGetColumnIndex("ImageGrey", out int greyColumn);
using (var cursor = grey.GetRowCursor((x) => true))
{
var bitmapGetter = cursor.GetGetter <Bitmap>(greyColumn);
Bitmap bitmap = default;
while (cursor.MoveNext())
{
bitmapGetter(ref bitmap);
Assert.NotNull(bitmap);
for (int x = 0; x < imageWidth; x++)
{
for (int y = 0; y < imageHeight; y++)
{
var pixel = bitmap.GetPixel(x, y);
// greyscale image has same values for R,G and B
Assert.True(pixel.R == pixel.G && pixel.G == pixel.B);
}
}
}
}
}
Done();
}
public async Task TestDownloadError()
{
var envVarOld = Environment.GetEnvironmentVariable(ResourceManagerUtils.CustomResourcesUrlEnvVariable);
var resourcePathVarOld = Environment.GetEnvironmentVariable(Utils.CustomSearchDirEnvVariable);
Environment.SetEnvironmentVariable(Utils.CustomSearchDirEnvVariable, null);
try
{
var envVar = Environment.GetEnvironmentVariable(ResourceManagerUtils.CustomResourcesUrlEnvVariable);
var saveToDir = GetOutputPath("copyto");
DeleteOutputPath("copyto", "breast-cancer.txt");
var sbOut = new StringBuilder();
var sbErr = new StringBuilder();
// Bad url.
if (!Uri.TryCreate("https://fake-website/fake-model.model/", UriKind.Absolute, out var badUri))
{
Fail("Uri could not be created");
}
Environment.SetEnvironmentVariable(ResourceManagerUtils.CustomResourcesUrlEnvVariable, badUri.AbsoluteUri);
envVar = Environment.GetEnvironmentVariable(ResourceManagerUtils.CustomResourcesUrlEnvVariable);
if (envVar != badUri.AbsoluteUri)
{
Fail("Environment variable not set properly");
}
DeleteOutputPath("copyto", "ResNet_18_Updated.model");
sbOut.Clear();
sbErr.Clear();
using (var outWriter = new StringWriter(sbOut))
using (var errWriter = new StringWriter(sbErr))
{
var env = new ConsoleEnvironment(42, outWriter: outWriter, errWriter: errWriter);
using (var ch = env.Start("Downloading"))
{
var fileName = "test_bad_url.model";
await Assert.ThrowsAsync <NotSupportedException>(() => ResourceManagerUtils.Instance.EnsureResourceAsync(env, ch, "Image/ResNet_18_Updated.model", fileName, saveToDir, 10 * 1000));
Log("Bad url");
Log($"out: {sbOut.ToString()}");
Log($"error: {sbErr.ToString()}");
if (File.Exists(Path.Combine(saveToDir, fileName)))
{
Fail($"File '{Path.Combine(saveToDir, fileName)}' should have been deleted.");
}
}
}
// Good url, bad page.
if (!Uri.TryCreate("https://cnn.com/", UriKind.Absolute, out var cnn))
{
Fail("Uri could not be created");
}
Environment.SetEnvironmentVariable(ResourceManagerUtils.CustomResourcesUrlEnvVariable, cnn.AbsoluteUri);
envVar = Environment.GetEnvironmentVariable(ResourceManagerUtils.CustomResourcesUrlEnvVariable);
if (envVar != cnn.AbsoluteUri)
{
Fail("Environment variable not set properly");
}
DeleteOutputPath("copyto", "ResNet_18_Updated.model");
sbOut.Clear();
sbErr.Clear();
using (var outWriter = new StringWriter(sbOut))
using (var errWriter = new StringWriter(sbErr))
{
var env = new ConsoleEnvironment(42, outWriter: outWriter, errWriter: errWriter);
using (var ch = env.Start("Downloading"))
{
var fileName = "test_cnn_page_does_not_exist.model";
await Assert.ThrowsAsync <NotSupportedException>(() => ResourceManagerUtils.Instance.EnsureResourceAsync(env, ch, "Image/ResNet_18_Updated.model", fileName, saveToDir, 10 * 1000));
Log("Good url, bad page");
Log($"out: {sbOut.ToString()}");
Log($"error: {sbErr.ToString()}");
if (File.Exists(Path.Combine(saveToDir, fileName)))
{
Fail($"File '{Path.Combine(saveToDir, fileName)}' should have been deleted.");
}
}
}
//Good url, good page
Environment.SetEnvironmentVariable(ResourceManagerUtils.CustomResourcesUrlEnvVariable, envVarOld);
envVar = Environment.GetEnvironmentVariable(ResourceManagerUtils.CustomResourcesUrlEnvVariable);
if (envVar != envVarOld)
{
Fail("Environment variable not set properly");
}
DeleteOutputPath("copyto", "sentiment.emd");
sbOut.Clear();
sbErr.Clear();
using (var outWriter = new StringWriter(sbOut))
using (var errWriter = new StringWriter(sbErr))
{
var env = new ConsoleEnvironment(42, outWriter: outWriter, errWriter: errWriter);
using (var ch = env.Start("Downloading"))
{
var fileName = "sentiment.emd";
var t = ResourceManagerUtils.Instance.EnsureResourceAsync(env, ch, "text/Sswe/sentiment.emd", fileName, saveToDir, 1 * 60 * 1000);
var results = await t;
if (results.ErrorMessage != null)
{
Fail(String.Format("Expected zero length error string. Received error: {0}", results.ErrorMessage));
}
if (t.Status != TaskStatus.RanToCompletion)
{
Fail("Download did not complete succesfully");
}
if (!File.Exists(GetOutputPath("copyto", "sentiment.emd")))
{
Fail($"File '{GetOutputPath("copyto", "sentiment.emd")}' does not exist. " +
$"File was downloaded to '{results.FileName}' instead." +
$"MICROSOFTML_RESOURCE_PATH is set to {Environment.GetEnvironmentVariable(Utils.CustomSearchDirEnvVariable)}");
}
}
}
Done();
}
finally
{
// Set environment variable back to its old value.
Environment.SetEnvironmentVariable(ResourceManagerUtils.CustomResourcesUrlEnvVariable, envVarOld);
Environment.SetEnvironmentVariable(Utils.CustomSearchDirEnvVariable, resourcePathVarOld);
}
}
