public ConstraintParser(IObjectRepository tdb,
IConstraint constraint,
ImplementationGuideType igType,
SimpleSchema igTypeSchema,
IEnumerable <Template> allTemplates,
string valueSetFile = "voc.xml",
VocabularyOutputType vocabularyOutputType = VocabularyOutputType.Default)
{
this.tdb = tdb;
this.constraint = constraint;
this.valueSetFile = valueSetFile;
this.igType = igType;
this.igTypeSchema = igTypeSchema;
this.allTemplates = allTemplates;
this.igTypePlugin = igType.GetPlugin();
if (!string.IsNullOrEmpty(this.constraint.Cardinality))
{
this.constraintCardinalityType = CardinalityParser.Parse(this.constraint.Cardinality);
}
if (!string.IsNullOrEmpty(this.constraint.Conformance))
{
this.constraintConformanceType = ConformanceParser.Parse(this.constraint.Conformance);
}
this.prefix = igType.SchemaPrefix;
this.vocabularyOutputType = vocabularyOutputType;
}
public static Conformance GetSparkConformance()
{
Conformance conformance = ConformanceBuilder.CreateServer("CDS-Spark", Info.Version, "ONC", fhirVersion: "0.5.0");
// Knowledge Modules
conformance.AddSingleResourceComponent
(
"OperationDefinition",
false,
true,
Conformance.ResourceVersionPolicy.NoVersion,
new ResourceReference {
Reference = "/fhir/StructureDefinition/knowledgemodule-cqf-cqf-knowledgemodule"
}
);
// Guidance Operation
conformance.AddOperation("guidance", new ResourceReference {
Reference = "/fhir/OperationDefinition/Basic-guidance"
});
// GuidanceRequirements Operation
conformance.AddOperation("guidanceRequirements", new ResourceReference {
Reference = "/fhir/OperationDefinition/Basic-guidancerequirements"
});
conformance.AcceptUnknown = true;
conformance.Experimental = true;
conformance.Format = new string[] { "xml", "json" };
conformance.Description = "This FHIR SERVER is a prototype implementation of the FHIR-Based Clinical Quality Framework Implementation Guide built in C# and based on the Spark FHIR Server";
return(conformance);
}
public Conformance MetaData()
{
Conformance thisConformance = new Conformance();
thisConformance.Description = "This is an test implementation of FHIR server which wrappes around the existing iPM APIs Using DSTU 2";
thisConformance.Date = DateTime.UtcNow.ToString("s");
thisConformance.Experimental = true;
thisConformance.AcceptUnknown = Conformance.UnknownContentCode.No;
thisConformance.FhirVersion = "Fhir.DSTU2 0.91.1.1";
thisConformance.Name = "FHIR Server for Patient Resources";
thisConformance.Rest = new List <Conformance.RestComponent>();
Conformance.RestComponent rc = new Conformance.RestComponent()
{
Mode = Conformance.RestfulConformanceMode.Server,
Resource = new List <Conformance.ResourceComponent>()
};
foreach (var servant in _servants.Values)
{
rc.Resource.Add(servant.Metadata());
}
thisConformance.Rest.Add(rc);
return(thisConformance);
}
public void SimpleValueSupport()
{
Conformance c = new Conformance();
Assert.IsNull(c.AcceptUnknown);
c.AcceptUnknown = true;
Assert.IsTrue(c.AcceptUnknown.GetValueOrDefault());
Assert.IsNotNull(c.AcceptUnknownElement);
Assert.IsTrue(c.AcceptUnknownElement.Value.GetValueOrDefault());
c.PublisherElement = new FhirString("Furore");
Assert.AreEqual("Furore", c.Publisher);
c.Publisher = null;
Assert.IsNull(c.PublisherElement);
c.Publisher = "Furore";
Assert.IsNotNull(c.PublisherElement);
c.Format = new string[] { "json", "xml" };
Assert.IsNotNull(c.FormatElement);
Assert.AreEqual(2, c.FormatElement.Count);
Assert.AreEqual("json", c.FormatElement.First().Value);
c.FormatElement = new List <Code>();
c.FormatElement.Add(new Code("csv"));
Assert.IsNotNull(c.Format);
Assert.AreEqual(1, c.Format.Count());
}
/// <summary>
/// Returns true if PdfConvertToPDFAParameters instances are equal
/// </summary>
/// <param name="input">Instance of PdfConvertToPDFAParameters to be compared</param>
/// <returns>Boolean</returns>
public bool Equals(PdfConvertToPDFAParameters input)
{
if (input == null)
{
return(false);
}
return
((
FileId == input.FileId ||
(FileId != null &&
FileId.Equals(input.FileId))
) &&
(
Conformance == input.Conformance ||
Conformance.Equals(input.Conformance)
) &&
(
AllowVectorization == input.AllowVectorization ||
AllowVectorization.Equals(input.AllowVectorization)
) &&
(
AllowRasterization == input.AllowRasterization ||
AllowRasterization.Equals(input.AllowRasterization)
));
}
/// <summary>
/// Gets the conformance reflecting the capabilities of all registred servants.
/// </summary>
/// <returns>Conformance.</returns>
public Conformance Metadata()
{
var conformance = new Conformance
{
Description = "This is an example implementation of an FHIR server - for demonstration purpose only.",
Date = DateTime.UtcNow.ToString("s"),
Experimental = true,
AcceptUnknown = false,
FhirVersion = "DSTU 1.1",
Name = "FHIR Server for Patient Resources",
Publisher = "MSDN Code Gallery, Stefan Heesch",
Telecom =
new List <Contact>
{
new Contact {
System = Contact.ContactSystem.Url, Value = "https://twitter.com/hb9tws"
}
},
Rest = new List <Conformance.ConformanceRestComponent>()
};
var rc = new Conformance.ConformanceRestComponent
{
Mode = Conformance.RestfulConformanceMode.Server,
Resource = new List <Conformance.ConformanceRestResourceComponent>()
};
foreach (var servant in _servants.Values)
{
rc.Resource.Add(servant.Metadata());
}
conformance.Rest.Add(rc);
return(conformance);
}
public static Conformance AddOperationDefintion(this Conformance conformance, IEnumerable <IFhirService> services)
{
var operationComponents = new List <Conformance.OperationComponent>();
foreach (var service in services)
{
var queryService = service;
var operationDefintion = queryService?.GetOperationDefinition();
if (!string.IsNullOrEmpty(operationDefintion?.Url))
{
operationComponents.Add(new Conformance.OperationComponent
{
Name = operationDefintion.Name,
Definition = new ResourceReference {
Reference = operationDefintion.Url
}
});
}
}
if (operationComponents.Count > 0)
{
conformance.Server().Operation.AddRange(operationComponents);
}
return(conformance);
}
internal Conformance GetMinimumConformanceForConstraint(TemplateConstraint aConstraint)
{
if (aConstraint == null)
{
return(Conformance.UNKNOWN);
}
Conformance minLevel = aConstraint.BusinessConformanceType;
TemplateConstraint constraint = aConstraint;
if (!IsBranchDescendent(aConstraint) || (aConstraint.IsPrimitive && aConstraint.IsSchRooted))
{
return(minLevel);
}
while (constraint != null)
{
if (minLevel < constraint.BusinessConformanceType)
{
minLevel = constraint.BusinessConformanceType;
}
if (constraint.IsBranch)
{
break;
}
constraint = constraint.ParentConstraint;
}
return(minLevel);
}
///<summary>
///Constructor.
///</summary>
internal GXDLMSSettings(bool server, InterfaceType interfaceType)
{
InterfaceType = interfaceType;
UseCustomChallenge = false;
StartingBlockIndex = BlockIndex = 1;
DLMSVersion = 6;
InvokeID = 0x1;
Priority = Priority.High;
ServiceClass = ServiceClass.Confirmed;
MaxServerPDUSize = MaxPduSize = DefaultMaxReceivePduSize;
IsServer = server;
Objects = new GXDLMSObjectCollection();
//This is removed later.
Hdlc = new GXDLMSLimits(this);
Gateway = null;
ProposedConformance = GXDLMSClient.GetInitialConformance(false);
if (server)
{
ProposedConformance |= Conformance.GeneralProtection;
}
ResetFrameSequence();
WindowSize = 1;
UserId = -1;
Standard = Standard.DLMS;
Plc = new GXPlcSettings(this);
}
public static Conformance AddAllSystemInteractions(this Conformance conformance)
{
foreach (Conformance.SystemRestfulInteraction code in Enum.GetValues(typeof(Conformance.SystemRestfulInteraction)))
{
conformance.AddSystemInteraction(code);
}
return(conformance);
}
public static Conformance AddMultipleResourceComponents(this Conformance conformance, List <String> resourcetypes, Boolean readhistory, Boolean updatecreate, Conformance.ResourceVersionPolicy versioning)
{
foreach (var type in resourcetypes)
{
AddSingleResourceComponent(conformance, type, readhistory, updatecreate, versioning);
}
return(conformance);
}
public static Conformance AddSearchSetInteraction(this Conformance conformance)
{
var searchSet = Conformance.SystemRestfulInteraction.SearchSystem;
conformance.AddSystemInteraction(searchSet);
return(conformance);
}
public static void AddSystemInteraction(this Conformance conformance, Conformance.SystemRestfulInteraction code)
{
var interaction = new Conformance.SystemInteractionComponent();
interaction.Code = code;
conformance.Rest().Interaction.Add(interaction);
}
public static Conformance AddAllCoreResources(this Conformance conformance, Boolean readhistory, Boolean updatecreate, Conformance.ResourceVersionPolicy versioning)
{
foreach (var resource in ModelInfo.SupportedResources)
{
conformance.AddSingleResourceComponent(resource, readhistory, updatecreate, versioning);
}
return(conformance);
}
/// <summary>
/// The role of this method is to take a list of constraints and produce a pattern with rules and assertions.
/// </summary>
/// <param name="constraints"></param>
/// <param name="phase"></param>
/// <param name="patternName"></param>
/// <param name="context"></param>
internal Pattern GeneratePattern(Conformance aMinimumConformance, IEnumerable <TemplateConstraint> constraints, Phase phase, string patternName, string ruleId, string context, string impliedPatternId = null, string impliedRuleId = null, bool isImplied = false)
{
var pattern = new Pattern();
pattern.IsImplied = isImplied;
pattern.ID = patternName;
pattern.Name = patternName;
pattern.IsA = impliedPatternId;
var rule = new Rule();
rule.Id = ruleId;
rule.Context = context;
rule.Extends = impliedRuleId;
pattern.Rules.Add(rule);
foreach (var constraint in constraints)
{
if (!constraint.CategoryIsMatch(this.categories))
{
continue;
}
try
{
Conformance conformance = GetMinimumConformanceForConstraint(constraint);
//ShouldSkipConstraint and turn on flag to skip any descendent of a branch b/c these get handled inside the branch context rules
if (ShouldSkipConstraint(constraint, true) || !MeetsConformance(aMinimumConformance, conformance))
{
continue;
}
//MAYs directly on the constraint should not be outputted (parent MAYs can be outputted, but not constraints with conformance MAY)
if (constraint.BusinessConformanceType == Conformance.MAY || constraint.BusinessConformanceType == Conformance.MAY_NOT)
{
continue;
}
rule.Assertions.Add(GetAssertion(constraint));
}
catch (Exception ex)
{
Log.For(this).Error("Error getting assertion for constraint {0} on template {1}.", ex, constraint.Id, constraint.TemplateId);
throw ex;
}
}
if (rule.Assertions.Count == 0)
{
rule.Assertions.Add(GenerateBlankAssertion());
}
// TODO: This should probably be moved to it's calling function
phase.ActivePatterns.Add(pattern);
return(pattern); //return the newly created pattern
}
public static Conformance AddAllInteractionsForAllResources(this Conformance conformance)
{
foreach (var r in conformance.Rest.FirstOrDefault().Resource.ToList())
{
conformance.Rest().Resource.Remove(r);
conformance.Rest().Resource.Add(AddAllResourceInteractions(r));
}
return(conformance);
}
public static Conformance AddCoreSearchParamsAllResources(this Conformance conformance)
{
foreach (var r in conformance.Rest.FirstOrDefault().Resource.ToList())
{
conformance.Rest().Resource.Remove(r);
conformance.Rest().Resource.Add(AddCoreSearchParamsResource(r));
}
return(conformance);
}
public static void AddOperation(this Conformance conformance, String name, ResourceReference definition)
{
var operation = new Conformance.OperationComponent();
operation.Name = name;
operation.Definition = definition;
conformance.Server().Operation.Add(operation);
}
/// <summary>
/// Helper function which creates an AssertionLineBuilder for an element given the constraint. This function will examine the constraint's value and datatype
/// and add those to the builder if necessary. Also if aGenerateContext == true then it will add the context of the element.
/// </summary>
/// <param name="aElement">Element to base the AssertionLineBuilder from</param>
/// <param name="aTemplateConstraint">TemplateConstraint which has the necessary properties (e.g. Element Value, Data Type) to add to the AssertionLineBuilder</param>
/// <param name="aGenerateContext">Flag to determine whether a context should be added as part of the AssertionLineBuilder</param>
/// <returns>A new AssertionLineBuilder for the aElement passed in</returns>
private AssertionLineBuilder CreateAssertionLineBuilderForElement(DocumentTemplateElement aElement, IConstraint aTemplateConstraint, ref string aParentContext, bool aGenerateContext = true)
{
//add the value and data type
ConstraintToDocumentElementHelper.AddElementValueAndDataType(this.prefix, aElement, aTemplateConstraint);
//create builders
var builder = new AssertionLineBuilder(this.tdb, aElement, this.igType, this.igTypeSchema);
if (aGenerateContext)
{
ContextBuilder contextBuilder = null;
if (aElement.ParentElement != null) //build the context
{
contextBuilder = new ContextBuilder(aElement.ParentElement, this.prefix); //the context will start from the first parent (or root)
builder.WithinContext(string.Format("{0}", contextBuilder.GetFullyQualifiedContextString()));
}
}
var containedTemplates = (from tcr in aTemplateConstraint.References
join t in this.allTemplates on tcr.ReferenceIdentifier equals t.Oid
where tcr.ReferenceType == ConstraintReferenceTypes.Template
select new { Identifier = t.Oid, t.PrimaryContextType });
foreach (var containedTemplate in containedTemplates)
{
builder.ContainsTemplate(containedTemplate.Identifier, containedTemplate.PrimaryContextType);
if (aTemplateConstraint.Parent != null && aTemplateConstraint.Parent.IsBranch)
{
builder.WithinContext(aParentContext, ContextWrapper.Slash); //put the parent context into the element context, this is a special case where we want the full context within the template assertion
aParentContext = string.Empty; //clear the parent context b/c we have put it within the element's context
}
}
if (aTemplateConstraint.Parent != null)
{
Conformance conformance = ConformanceParser.Parse(aTemplateConstraint.Parent.Conformance);
if (conformance == Conformance.SHOULD)
{
builder.HasOptionalParentContext();
}
}
//TODO: Refactor this out, hardcoding these special cases for QRDA
if (this.prefix.ToLower().Contains("cda"))
{
aElement.ElementToAttributeOverrideMapping.Add("code", "code");
aElement.ElementToAttributeOverrideMapping.Add("statusCode", "code");
aElement.ElementToAttributeOverrideMapping.Add("realmCode", "code");
aElement.ElementToAttributeOverrideMapping.Add("externalDocument", "classCode");
}
return(builder);
}
public static Conformance AddSummaryForAllResources(this Conformance conformance)
{
foreach (var resource in conformance.Rest.FirstOrDefault().Resource.ToList())
{
var p = new Conformance.SearchParamComponent();
p.Name = "_summary";
p.Type = SearchParamType.String;
p.Documentation = "Summary for resource";
resource.SearchParam.Add(p);
}
return(conformance);
}
public static Conformance AddSingleResourceComponent(this Conformance conformance, String resourcetype, Boolean readhistory, Boolean updatecreate, Conformance.ResourceVersionPolicy versioning, ResourceReference profile = null)
{
var resource = new Conformance.ResourceComponent();
resource.Type = Hacky.GetResourceTypeForResourceName(resourcetype);
resource.Profile = profile;
resource.ReadHistory = readhistory;
resource.UpdateCreate = updatecreate;
resource.Versioning = versioning;
conformance.Server().Resource.Add(resource);
return(conformance);
}
/// <summary>
/// Get conformance
/// </summary>
public Conformance GetOptions()
{
this.ThrowIfNotReady();
var retVal = new Conformance(); // ConformanceUtil.GetConformanceStatement();
WebOperationContext.Current.OutgoingResponse.Headers.Add("Content-Location", String.Format("{0}Conformance/{1}/_history/{2}", WebOperationContext.Current.IncomingRequest.UriTemplateMatch.BaseUri, retVal.Id, retVal.VersionId));
WebOperationContext.Current.OutgoingResponse.StatusCode = HttpStatusCode.OK;
WebOperationContext.Current.OutgoingResponse.Headers.Remove("Content-Disposition");
WebOperationContext.Current.OutgoingResponse.Headers.Add("Content-Disposition", "filename=\"conformance.xml\"");
return(retVal);
}
public void FetchConformance()
{
FhirClient client = new FhirClient(testEndpoint);
Conformance c = client.Conformance().Resource;
Assert.IsNotNull(c);
Assert.AreEqual("HL7Connect", c.Software.Name);
Assert.AreEqual(Conformance.RestfulConformanceMode.Server, c.Rest[0].Mode.Value);
Assert.AreEqual(ContentType.XML_CONTENT_HEADER, client.LastResponseDetails.ContentType.ToLower());
Assert.AreEqual(HttpStatusCode.OK, client.LastResponseDetails.Result);
}
public Conformance Get()
{
var conformance = new Conformance();
conformance.ConformsTo = new List <string>()
{
"http://www.opengis.net/spec/ogcapi-features-1/1.0/req/core",
"http://www.opengis.net/spec/ogcapi-features-1/1.0/req/oas30",
"http://www.opengis.net/spec/ogcapi-features-1/1.0/req/html",
"http://www.opengis.net/spec/ogcapi-features-1/1.0/req/geojson"
};
return(conformance);
}
public static Conformance.RestComponent AddRestComponent(this Conformance conformance, Boolean isServer, String documentation = null)
{
var server = new Conformance.RestComponent();
server.Mode = (isServer) ? Conformance.RestfulConformanceMode.Server : Conformance.RestfulConformanceMode.Client;
if (documentation != null)
{
server.Documentation = documentation;
}
conformance.Rest.Add(server);
return(server);
}
/// <summary>
/// Returns true if ImageSaveAsPDFMRCParameters instances are equal
/// </summary>
/// <param name="input">Instance of ImageSaveAsPDFMRCParameters to be compared</param>
/// <returns>Boolean</returns>
public bool Equals(ImageSaveAsPDFMRCParameters input)
{
if (input == null)
{
return(false);
}
return
((
FileId == input.FileId ||
(FileId != null &&
FileId.Equals(input.FileId))
) &&
(
PageRange == input.PageRange ||
(PageRange != null &&
PageRange.Equals(input.PageRange))
) &&
(
Conformance == input.Conformance ||
Conformance.Equals(input.Conformance)
) &&
(
ColorImageCompression == input.ColorImageCompression ||
ColorImageCompression.Equals(input.ColorImageCompression)
) &&
(
BitonalImageCompression == input.BitonalImageCompression ||
BitonalImageCompression.Equals(input.BitonalImageCompression)
) &&
(
ImageQuality == input.ImageQuality ||
ImageQuality.Equals(input.ImageQuality)
) &&
(
DownscaleResolution == input.DownscaleResolution ||
DownscaleResolution.Equals(input.DownscaleResolution)
) &&
(
PreserveSmoothing == input.PreserveSmoothing ||
PreserveSmoothing.Equals(input.PreserveSmoothing)
) &&
(
FastWebView == input.FastWebView ||
FastWebView.Equals(input.FastWebView)
) &&
(
JBIG2PMSThreshold == input.JBIG2PMSThreshold ||
JBIG2PMSThreshold.Equals(input.JBIG2PMSThreshold)
));
}
public static Conformance AddSingleResourceComponent(this Conformance conformance, string resourcetype, bool readhistory, bool updatecreate, Conformance.ResourceVersionPolicy versioning, ResourceReference profile = null)
{
var resource = new Conformance.ResourceComponent
{
Type = (ResourceType)Enum.Parse(typeof(ResourceType), resourcetype, true),
Profile = profile,
ReadHistory = readhistory,
UpdateCreate = updatecreate,
Versioning = versioning
};
conformance.Server().Resource.Add(resource);
return(conformance);
}
public static Conformance AddSearchTypeInteractionForResources(this Conformance conformance)
{
var firstOrDefault = conformance.Rest.FirstOrDefault();
if (firstOrDefault != null)
{
foreach (var r in firstOrDefault.Resource.ToList())
{
conformance.Rest().Resource.Remove(r);
conformance.Rest().Resource.Add(AddSearchType(r));
}
}
return(conformance);
}
public static Conformance CreateServer(string server, string serverVersion, string publisher, string fhirVersion)
{
var conformance = new Conformance
{
Name = server,
Publisher = publisher,
Version = serverVersion,
FhirVersion = fhirVersion,
AcceptUnknown = Conformance.UnknownContentCode.No,
Date = Date.Today().Value
};
conformance.AddServer();
return(conformance);
}
public static Conformance.RestComponent AddRestComponent(this Conformance conformance, bool isServer, string documentation = null)
{
var server = new Conformance.RestComponent
{
Mode =
isServer ? Conformance.RestfulConformanceMode.Server : Conformance.RestfulConformanceMode.Client
};
if (documentation != null)
{
server.Documentation = documentation;
}
conformance.Rest.Add(server);
return(server);
}