private List <Analysis> CreateAnalysis(List <DataTypes.ISample> samples)
{
var psetFileList = new PSetDataFileList();
foreach (DataTypes.ISample sample in samples)
{
if (sample.HideOrShow)
{
List <string> sampleGroupTitles = sample.GetDefaultGroupingTitles();
List <string> sampleGroups = sample.GetDefaultSampleGroups();
psetFileList.SelectedFileName.Add(new BatchExtractorFileSelect(sample.FileName, sample.HideOrShow, sampleGroups, sampleGroupTitles));
}
}
InputParametersUtil.SavePSet(qualAppLogic, psetFileList, QualInMemoryMethod.ParamDataFileList);
Console.WriteLine("Creating Analysis");
List <Analysis> Analyses = new List <Analysis>();
if (m_analysisFiles.Count <= 0)
{
return(Analyses);
}
AnalysisMethodLoadOptions loadMethod = AnalysisMethodLoadOptions.LoadFromWorklist;
bool loadResults = false;
bool runLoadTimeScripts = false;
CmdOpenAnalysisFile cmdOpenAnalysis = new CmdOpenAnalysisFile
(qualAppLogic,
m_analysisFiles.ToArray(),
loadMethod,
loadResults,
runLoadTimeScripts);
ExecuteCommand(qualAppLogic, cmdOpenAnalysis);
foreach (string analysisPath in m_analysisFiles)
{
Analysis anlysis = qualAppLogic.DataHeirarchy.AnalysisStore.Values.Cast <Analysis>().First(a => a.FilePath == analysisPath);
Analyses.Add(anlysis);
}
Console.WriteLine("Analysis Creation Done");
return(Analyses);
}
public List <DataTypes.CompoundGroup> GetCompoundGroups(List <string> analysisFiles)
{
try
{
qualAppLogic.AppExecutionMode = AppExecutionMode.WorkListAutomation;
CmdInitializeApplication cmdInit = new CmdInitializeApplication(qualAppLogic);
ExecuteCommand(qualAppLogic, cmdInit);
QualFeatureConfig.InitRegistryFromAppConfig();
qualAppLogic.AppProgressEvent += new AppProgressEventHandler(OnAppProgressEvent);
IAppState appState = qualAppLogic as IAppState;
//appState.ThreadErrorReporter = m_messageReporter;
AnalysisMethodLoadOptions loadMethod = GetAnalysisMethodLoadOptions(null);
//if (analysisFiles.Count > 0)
//{
bool loadResults = false;
bool runLoadTimeScripts = false;
CmdOpenAnalysisFile cmdOpenAnalysis = new CmdOpenAnalysisFile
(qualAppLogic,
analysisFiles.ToArray(),
loadMethod,
loadResults,
runLoadTimeScripts);
ExecuteCommand(qualAppLogic, cmdOpenAnalysis);
RunScript(qualAppLogic, analysisFiles);
IEnumerable <Agilent.MassSpectrometry.DataAnalysis.ICompoundGroup> cpdGroups = qualAppLogic.DataStore.CompoundGroups;
List <DataTypes.CompoundGroup> compoundGroups = new List <DataTypes.CompoundGroup>();
foreach (Agilent.MassSpectrometry.DataAnalysis.ICompoundGroup cpdGroup in cpdGroups)
{
DataTypes.CompoundGroup compoundGroup = getICompoundGroup(cpdGroup, analysisFiles) as DataTypes.CompoundGroup;
compoundGroups.Add(compoundGroup);
}
Console.ReadKey();
}
catch (MSDAApplicationException msdaExep)
{
Console.WriteLine(msdaExep.Message);
}
catch (Exception e)
{
string analysisName = "";
for (int analysisInd = 0; analysisInd < analysisFiles.Count; analysisInd++)
{
if (analysisName == "")
{
analysisName = analysisFiles[analysisInd];
}
else
{
analysisName = analysisName + " , " + analysisFiles[analysisInd];
}
}
Console.WriteLine(e.StackTrace);
}
return(null);
}
