protected void Initialize()
{
MockEventAggregator = new Mock<IEventAggregator>();
MockRegionManager = new Mock<IRegionManager>();
MockServiceLocator = new Mock<IServiceLocator>();
MockBackgroundWorker = new Mock<BackgroundWorker>();
OutputEvent = new OutputEvent();
ClickableOutputEvent = new ClickableOutputEvent();
ProjectOpeningEvent projectOpeningEvent = new ProjectOpeningEvent();
LoadProjectEvent loadProjectEvent = new LoadProjectEvent();
ClearOutputEvent clearOutputEvent = new ClearOutputEvent();
ResultAddedEvent resultAddedEvent = new ResultAddedEvent();
ViewResultsEvent viewResultsEvent = new ViewResultsEvent();
StatusUpdateEvent statusUpdateEvent = new StatusUpdateEvent();
MockEventAggregator.Setup(mock => mock.GetEvent<ClearOutputEvent>()).Returns(clearOutputEvent);
MockEventAggregator.Setup(mock => mock.GetEvent<OutputEvent>()).Returns(OutputEvent);
MockEventAggregator.Setup(mock => mock.GetEvent<ClickableOutputEvent>()).Returns(ClickableOutputEvent);
MockEventAggregator.Setup(mock => mock.GetEvent<ProjectOpeningEvent>()).Returns(projectOpeningEvent);
MockEventAggregator.Setup(mock => mock.GetEvent<LoadProjectEvent>()).Returns(loadProjectEvent);
MockEventAggregator.Setup(mock => mock.GetEvent<ResultAddedEvent>()).Returns(resultAddedEvent);
MockEventAggregator.Setup(mock => mock.GetEvent<ViewResultsEvent>()).Returns(viewResultsEvent);
MockEventAggregator.Setup(mock => mock.GetEvent<StatusUpdateEvent>()).Returns(statusUpdateEvent);
List<IExperimentType> experimentTypes = new List<IExperimentType>();
experimentTypes.Add(new HydraExperimentType(MockServiceLocator.Object));
List<IDataProvider> dataProviders = new List<IDataProvider>();
dataProviders.Add(new ProteoWizardDataProvider(MockEventAggregator.Object));
MockServiceLocator.Setup(mock => mock.GetAllInstances<IExperimentType>()).Returns(experimentTypes);
MockServiceLocator.Setup(mock => mock.GetAllInstances<IDataProvider>()).Returns(dataProviders);
}
public MsMsSpectrumSelection(IEventAggregator eventAggregator, IRegionManager regionManager)
{
this.eventAggregator = eventAggregator;
this.regionManager = regionManager;
clickableOutput = eventAggregator.GetEvent<ClickableOutputEvent>();
LCPeakElutionWidth = 1;
MZVariablility = 0.2;
}
public void MyTestInitialize()
{
mockDataProvider = new Mock<IDataProvider>();
Mock<IEventAggregator> mockEventAggregator = new Mock<IEventAggregator>();
Mock<IRegionManager> mockRegionManager = new Mock<IRegionManager>();
clickableOutputEvent = new ClickableOutputEvent();
mockEventAggregator.Setup(mock => mock.GetEvent<ClickableOutputEvent>()).Returns(clickableOutputEvent);
xicSelection = new XicSelection(mockEventAggregator.Object, mockRegionManager.Object);
}
public SavitzkyGolaySmoothing(IEventAggregator eventAggregator, IRegionManager regionManager)
{
_eventAggregator = eventAggregator;
_output = eventAggregator.GetEvent<OutputEvent>();
_clickableOutput = eventAggregator.GetEvent<ClickableOutputEvent>();
_regionManager = regionManager;
Enabled = true;
LeftParam = 3;
RightParam = 3;
Order = 2;
}
private void OnPublish(ClickableOutputEvent outputEvent)
{
publishCalled = true;
Assert.AreEqual(" XIC found (sample=test.mzxml, x values=2, y values=2, time unit=Seconds)", outputEvent.Text);
Assert.AreEqual(2, ((IXYData)outputEvent.Parameter).XValues.Count);
Assert.AreEqual(1, ((IXYData)outputEvent.Parameter).XValues[0]);
Assert.AreEqual(2, ((IXYData)outputEvent.Parameter).XValues[1]);
Assert.AreEqual(3, ((IXYData)outputEvent.Parameter).YValues[0]);
Assert.AreEqual(4, ((IXYData)outputEvent.Parameter).YValues[1]);
Assert.IsNotNull(outputEvent.Click);
}
public IXYData Execute(Sample sample, double rt, double mz)
{
IXYData spectrum = sample.GetMsMsSpectrum(rt, LCPeakElutionWidth, mz, mzVariability);
spectrum.Title = "MSMS (RT=" + rt.ToString("N2") + " LCPeakElutionWidth=" + LCPeakElutionWidth.ToString("N2") + " mz=" + mz.ToString("N2") + " MZ Range=" + mzVariability.ToString("N2") + ") - " + Path.GetFileName(sample.FileName);
ClickableOutputEvent clickableOutput = new ClickableOutputEvent();
clickableOutput.Click = new DelegateCommand<IXYData>(OnViewXIC);
clickableOutput.Text = " MSMS Spectrum found (sample=" + sample.FileName + ", x values=" + spectrum.XValues.Count + ", y values=" + spectrum.YValues.Count + ")";
clickableOutput.Parameter = spectrum;
this.clickableOutput.Publish(clickableOutput);
return spectrum;
}
public IXYData Execute(Sample sample, double mass1)
{
IXYData xicData = sample.GetExtractedIonChromatogram(mass1, mass1, _mzVar, Core.TimeUnit.Seconds);
xicData.Title = "XIC (" + mass1.ToString("N4") + " mzTol=" + _mzVar + ") - " + Path.GetFileName(sample.FileName);
ClickableOutputEvent clickableOutput = new ClickableOutputEvent();
clickableOutput.Click = new DelegateCommand<IXYData>(OnViewXIC);
clickableOutput.Text = " XIC found (sample=" + sample.FileName + ", x values=" + xicData.XValues.Count + ", y values=" + xicData.YValues.Count + ", time unit=" + xicData.TimeUnit + ")";
clickableOutput.Parameter = xicData;
_clickableOutput.Publish(clickableOutput);
return xicData;
}
private void AddClickableOutput(ClickableOutputEvent value)
{
OutputText.Add(new ClickableText(value.Text, value.Click, value.Parameter));
}
public XicSelection(IEventAggregator eventAggregator, IRegionManager regionManager)
{
_eventAggregator = eventAggregator;
_regionManager = regionManager;
_clickableOutput = _eventAggregator.GetEvent<ClickableOutputEvent>();
}
public void MyTestInitialize()
{
Mock<IRegionManager> mockRegionManager = new Mock<IRegionManager>();
mockDataProvider = new Mock<IDataProvider>();
mockEventAggregator = new Mock<IEventAggregator>();
outputEvent = new OutputEvent();
clickableOutputEvent = new ClickableOutputEvent();
mockEventAggregator.Setup(mock => mock.GetEvent<ClickableOutputEvent>()).Returns(clickableOutputEvent);
mockEventAggregator.Setup(mock => mock.GetEvent<OutputEvent>()).Returns(outputEvent);
smoothing = new SavitzkyGolaySmoothing(mockEventAggregator.Object, mockRegionManager.Object);
}
private void OnClickablePublish(ClickableOutputEvent actualValue)
{
clickablePublishCalled = true;
Assert.AreEqual(" Smoothing completed", actualValue.Text);
}
public IXYData Execute(Sample sample, double startTime, double stopTime, double monoIsotopicMass)
{
IXYData spectrum = sample.GetSpectrum(startTime, stopTime, monoIsotopicMass + MZLowerOffset, monoIsotopicMass + MZUpperOffset, 0);
spectrum.Title = "MS (RT=" + startTime.ToString("N2") + "-" + stopTime.ToString("N2") + " Mass=" + monoIsotopicMass.ToString("N4") + ") - " + Path.GetFileName(sample.FileName);
ClickableOutputEvent clickableOutput = new ClickableOutputEvent();
clickableOutput.Click = new DelegateCommand<IXYData>(OnViewXIC);
clickableOutput.Text = " Spectrum found (sample=" + sample.FileName + ", x values=" + spectrum.XValues.Count + ", y values=" + spectrum.YValues.Count + ")";
clickableOutput.Parameter = spectrum;
_clickableOutput.Publish(clickableOutput);
return spectrum;
}
