// make sure individual read cigars make sense against stitched cigar protected static void ValidateCigar(CigarAlignment stitchedCigar, CigarAlignment read1Cigar, CigarAlignment read2Cigar) { if (!stitchedCigar.IsSupported()) { throw new Exception(String.Format("Unsupported cigar: {0}", stitchedCigar)); } ValidateCigar(stitchedCigar, read1Cigar); ValidateCigar(stitchedCigar.GetReverse(), read2Cigar.GetReverse()); }
public void ValidateCigarAignment() { //valid cigar string Assert.True(new CigarAlignment("5M3D4M7I2S8M").IsSupported()); //invalid cigar string var alignment = new CigarAlignment(); alignment.Add(new CigarOp('M', 5)); alignment.Add(new CigarOp('U', 7)); alignment.Add(new CigarOp('I', 3)); alignment.Add(new CigarOp('M', 7)); Assert.False(alignment.IsSupported()); }