public void validate_loading_spectral_database_from_tsv_in_resources()
{
Stream stream = StreamFinder.GetFileStreamFromResources("Modeling/Spectroscopy/Resources/Spectra.txt", "Vts");
List <ChromophoreSpectrum> myChromophoreList = new List <ChromophoreSpectrum>();
//create 2 sets of values for the tab delimeted file
ChromophoreSpectrum c = new ChromophoreSpectrum();
c.Name = "HbO2";
c.AbsorptionCoefficientUnit = AbsorptionCoefficientUnit.InverseMillimeters;
c.MolarUnit = MolarUnit.None;
c.ChromophoreCoefficientType = ChromophoreCoefficientType.MolarAbsorptionCoefficient;
myChromophoreList.Add(c);
ChromophoreSpectrum c2 = new ChromophoreSpectrum();
c2.Name = "Hb";
c2.AbsorptionCoefficientUnit = AbsorptionCoefficientUnit.InverseMillimeters;
c2.MolarUnit = MolarUnit.None;
c2.ChromophoreCoefficientType = ChromophoreCoefficientType.MolarAbsorptionCoefficient;
myChromophoreList.Add(c2);
var testDictionary = myChromophoreList.ToDictionary();
SpectralDatabase.AppendDatabaseFromFile(testDictionary, stream);
testDictionary.WriteToJson("dictionary3.txt");
Assert.IsTrue(FileIO.FileExists("dictionary3.txt"));
}
public void validate_Serializing_Chromophore_Spectrum()
{
ChromophoreSpectrum chromophoreSpectrum = CreateChromophoreSpectrum();
chromophoreSpectrum.WriteToJson("ChromophoreSpectrum.txt");
Assert.IsTrue(FileIO.FileExists("ChromophoreSpectrum.txt"));
}
public void validate_Deserializing_Chromophore_Spectrum()
{
ChromophoreSpectrum chromophoreSpectrum = CreateChromophoreSpectrum();
chromophoreSpectrum.WriteToJson("ChromophoreSpectrum.txt");
var chromophoreSpectrumRead = FileIO.ReadFromJson <ChromophoreSpectrum>("ChromophoreSpectrum.txt");
Assert.IsInstanceOf <ChromophoreSpectrum>(chromophoreSpectrumRead);
}
private ChromophoreSpectrumDictionary CreateDictionary()
{
string name = "Melanin";
AbsorptionCoefficientUnit muaUnit = AbsorptionCoefficientUnit.InverseMillimeters;
MolarUnit molarUnit = MolarUnit.MicroMolar;
ChromophoreCoefficientType coeffType = ChromophoreCoefficientType.FractionalAbsorptionCoefficient;
// populate list of wavelengths
List <double> wavelengths = new List <double>();
wavelengths.Add(0.0);
wavelengths.Add(1.0);
wavelengths.Add(2.0);
// populate list of values
List <double> values = new List <double>();
values.Add(0.1);
values.Add(1.1);
values.Add(2.1);
ChromophoreSpectrum chromophoreSpectrum = new ChromophoreSpectrum(wavelengths, values, name, coeffType, muaUnit, molarUnit, WavelengthUnit.Nanometers);
var testDictionary = new ChromophoreSpectrumDictionary();
testDictionary.Add(chromophoreSpectrum.Name, chromophoreSpectrum);
name = "HbO2";
muaUnit = AbsorptionCoefficientUnit.InverseMillimeters;
molarUnit = MolarUnit.MicroMolar;
coeffType = ChromophoreCoefficientType.MolarAbsorptionCoefficient;
chromophoreSpectrum = new ChromophoreSpectrum(wavelengths, values, name, coeffType, muaUnit, molarUnit, WavelengthUnit.Nanometers);
testDictionary.Add(chromophoreSpectrum.Name, chromophoreSpectrum);
return(testDictionary);
}