public override bool GetChromatogram(
int id, string modifiedSequence, Color peptideColor,
out ChromExtra extra, out float[] times, out int[] scanIndexes, out float[] intensities, out float[] massErrors)
{
var chromKeyIndices = _chromKeyIndices[id];
if (_lastChromGroupInfo == null || _lastIndices.GroupIndex != chromKeyIndices.GroupIndex)
{
_lastChromGroupInfo = _cache.LoadChromatogramInfo(chromKeyIndices.GroupIndex);
_lastChromGroupInfo.ReadChromatogram(_cache);
}
_lastIndices = chromKeyIndices;
var tranInfo = _lastChromGroupInfo.GetTransitionInfo(chromKeyIndices.TranIndex);
times = tranInfo.Times;
intensities = tranInfo.Intensities;
massErrors = null;
if (tranInfo.MassError10Xs != null)
{
massErrors = tranInfo.MassError10Xs.Select(m => m / 10.0f).ToArray();
}
scanIndexes = null;
if (tranInfo.ScanIndexes != null)
{
scanIndexes = tranInfo.ScanIndexes[(int)chromKeyIndices.Key.Source];
}
// Assume that each chromatogram will be read once, though this may
// not always be completely true.
_readChromatograms++;
// But avoid reaching 100% before reading is actually complete
SetPercentComplete(Math.Min(99, 100 * _readChromatograms / _chromKeyIndices.Length));
extra = new ChromExtra(chromKeyIndices.StatusId, chromKeyIndices.StatusRank);
// Display in AllChromatogramsGraph
if (chromKeyIndices.Key.Precursor != 0 && Status is ChromatogramLoadingStatus)
{
((ChromatogramLoadingStatus)Status).Transitions.AddTransition(
modifiedSequence,
peptideColor,
chromKeyIndices.StatusId,
chromKeyIndices.StatusRank,
times,
intensities);
}
return(true);
}
public override bool GetChromatogram(
int id, string modifiedSequence, Color peptideColor,
out ChromExtra extra, out float[] times, out int[] scanIndexes, out float[] intensities, out float[] massErrors)
{
var chromKeyIndices = _chromKeyIndices[id];
if (_lastChromGroupInfo == null || _lastIndices.GroupIndex != chromKeyIndices.GroupIndex)
{
_lastChromGroupInfo = _cache.LoadChromatogramInfo(chromKeyIndices.GroupIndex);
_lastChromGroupInfo.ReadChromatogram(_cache);
}
_lastIndices = chromKeyIndices;
var tranInfo = _lastChromGroupInfo.GetTransitionInfo(chromKeyIndices.TranIndex);
times = tranInfo.Times;
intensities = tranInfo.Intensities;
massErrors = null;
if (tranInfo.MassError10Xs != null)
{
massErrors = tranInfo.MassError10Xs.Select(m => m / 10.0f).ToArray();
}
scanIndexes = null;
if (tranInfo.ScanIndexes != null)
{
scanIndexes = tranInfo.ScanIndexes[(int)chromKeyIndices.Key.Source];
}
SetPercentComplete(100 * id / _chromKeyIndices.Length);
extra = new ChromExtra(chromKeyIndices.StatusId, chromKeyIndices.StatusRank);
// Display in AllChromatogramsGraph
if (chromKeyIndices.Key.Precursor != 0)
{
LoadingStatus.Transitions.AddTransition(
modifiedSequence,
peptideColor,
chromKeyIndices.StatusId,
chromKeyIndices.StatusRank,
times,
intensities);
}
return(true);
}
public override bool GetChromatogram(int id, Target modifiedSequence, Color peptideColor, out ChromExtra extra, out TimeIntensities timeIntensities)
{
var chromKeyIndices = _chromKeyIndices[id];
if (_lastChromGroupInfo == null || _lastIndices.GroupIndex != chromKeyIndices.GroupIndex)
{
_lastChromGroupInfo = _cache.LoadChromatogramInfo(chromKeyIndices.GroupIndex);
_lastChromGroupInfo.ReadChromatogram(_cache);
}
_lastIndices = chromKeyIndices;
var tranInfo = _lastChromGroupInfo.GetTransitionInfo(chromKeyIndices.TranIndex);
timeIntensities = tranInfo.TimeIntensities;
// Assume that each chromatogram will be read once, though this may
// not always be completely true.
_readChromatograms++;
// But avoid reaching 100% before reading is actually complete
SetPercentComplete(Math.Min(99, 100 * _readChromatograms / _chromKeyIndices.Length));
extra = new ChromExtra(chromKeyIndices.StatusId, chromKeyIndices.StatusRank);
// Display in AllChromatogramsGraph
if (chromKeyIndices.Key.Precursor != 0 && Status is ChromatogramLoadingStatus)
{
((ChromatogramLoadingStatus)Status).Transitions.AddTransition(
modifiedSequence,
peptideColor,
chromKeyIndices.StatusId,
chromKeyIndices.StatusRank,
timeIntensities.Times,
timeIntensities.Intensities);
}
return(true);
}
public override bool GetChromatogram(
int id, string modifiedSequence, Color peptideColor,
out ChromExtra extra, out float[] times, out int[] scanIndexes, out float[] intensities, out float[] massErrors)
{
var chromKeyIndices = _chromKeyIndices[id];
if (_lastChromGroupInfo == null || _lastIndices.GroupIndex != chromKeyIndices.GroupIndex)
{
_lastChromGroupInfo = _cache.LoadChromatogramInfo(chromKeyIndices.GroupIndex);
_lastChromGroupInfo.ReadChromatogram(_cache);
}
_lastIndices = chromKeyIndices;
var tranInfo = _lastChromGroupInfo.GetTransitionInfo(chromKeyIndices.TranIndex);
times = tranInfo.Times;
intensities = tranInfo.Intensities;
massErrors = null;
if (tranInfo.MassError10Xs != null)
massErrors = tranInfo.MassError10Xs.Select(m => m/10.0f).ToArray();
scanIndexes = null;
if (tranInfo.ScanIndexes != null)
scanIndexes = tranInfo.ScanIndexes[(int) chromKeyIndices.Key.Source];
SetPercentComplete(100 * id / _chromKeyIndices.Length);
extra = new ChromExtra(chromKeyIndices.StatusId, chromKeyIndices.StatusRank);
// Display in AllChromatogramsGraph
if (chromKeyIndices.Key.Precursor != 0)
{
LoadingStatus.Transitions.AddTransition(
modifiedSequence,
peptideColor,
chromKeyIndices.StatusId,
chromKeyIndices.StatusRank,
times,
intensities);
}
return true;
}
