/// <summary>
/// Builds static list of available Lookup Codes
/// </summary>
/// <param name="combo"></param>
private void BuildLookupCodeCombo(ICaisisInputControl icic)
{
if (icic is CaisisComboBox)
{
CaisisComboBox combo = icic as CaisisComboBox;
combo.BuildComboData(LookupCodesTable, LookupCode.LkpFieldName, LookupCode.LkpFieldName);
}
}
private void AddEntryField(ICaisisInputControl control)
{
// TODO: handle control.Required
if (control.Required)
{
controlsToValidate.Add(control as Control);
}
// TODO: styles and other whatnots
Panel panel = new Panel();
panel.CssClass = "DataEntryRow";
panel.Controls.Add((Control)control);
// Special Cases
if ((MatchProtocol("c12-097") || MatchProtocol("c10-070")) && control.Table == "Status" && control.Field == "Status" && control is ListControl)
{
ListControl listControl = control as ListControl;
listControl.PreRender += (a, b) =>
{
listControl.DataTextField = "";
listControl.DataValueField = "";
listControl.DataSource = PATIENT_STATUSES;
listControl.DataBind();
};
}
else if (MatchProtocol("c12-108") && control.Table == "Categories" && control.Field == "Category" && control is ICaisisLookupControl)
{
// build static data
string[] values = new string[] { "Positive", "Negative" };
DataTable comboData = new DataTable();
comboData.Columns.Add(new DataColumn("Category"));
foreach (string value in values)
{
comboData.Rows.Add(value);
}
CaisisComboBox combo = control as CaisisComboBox;
CaisisSelect select = control as CaisisSelect;
if (combo != null)
{
combo.BuildComboData(comboData, "Category", "Category");
}
else if (select != null)
{
select.PreRender += (a, b) =>
{
select.DataTextField = "Category";
select.DataValueField = "Category";
select.DataSource = comboData;
select.DataBind();
};
}
}
container.Controls.Add(panel);
}
/// <summary>
/// Sets the event and detail name to "disabled", enabled on client side
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
protected void SetComboDisable(object sender, GridViewRowEventArgs e)
{
CaisisComboBox nameField = e.Row.FindControl("NameComboBox") as CaisisComboBox;
ImageButton editBtn = e.Row.FindControl("EditBtn") as ImageButton;
if (nameField != null && editBtn != null)
{
nameField.Attributes["disabled"] = bool.TrueString.ToLower();
editBtn.OnClientClick = "return editField('" + nameField.ClientID + "');";
}
}
protected void SetProcedures(object sender, GridViewRowEventArgs e)
{
if (e.Row.RowType == DataControlRowType.DataRow)
{
// set proc name drop down
CaisisComboBox combo = e.Row.FindControl("ProcName") as CaisisComboBox;
if (combo != null)
{
combo.BuildComboData(procedureLookupNames, "LkpCode", "LkpDescription");
}
}
}
/// <summary>
/// Dynamically set columns
/// </summary>
private void InitSpecimensGrid()
{
SpecimenAccession accession = new SpecimenAccession();
Specimen specimen = new Specimen();
var accessionFields = accession.FieldNames;
var specimenFields = specimen.FieldNames;
var specimenMetadata = CICHelper.GetCaisisInputControlsByTableName(specimen.TableName, "").ToDictionary(f => f.Field, f => f);
//SpecimenInventory.Columns.Clear();
foreach (var column in GetSpecimenColumns())
{
string fieldName = column.Key;
string fieldLabel = column.Value;
// get input
CaisisTextBox defaultInput = new CaisisTextBox();
ICaisisInputControl fieldInput = defaultInput;
// special case: lookup controls map to distinct combo values
if (specimenFields.Contains(fieldName) && specimenMetadata.ContainsKey(fieldName))
{
fieldInput = specimenMetadata[fieldName];
// select, radio list, check list => combo box
if (fieldInput is ICaisisLookupControl && !(fieldInput is CaisisComboBox))
fieldInput = new CaisisComboBox();
fieldInput.Table = specimen.TableName;
}
// global
fieldInput.Field = fieldName;
fieldInput.FieldLabel = fieldLabel;
fieldInput.ShowLabel = false;
CaisisDataBoundField boundField = new CaisisDataBoundField(fieldInput);
SpecimenInventory.Columns.Add(boundField);
}
// only enable specimen fields for edit
SpecimenInventory.RowCreated += (o, e) =>
{
var inputs = CICHelper.GetCaisisInputControls(e.Row);
foreach (var fieldInput in inputs)
{
if (fieldInput.Table == specimen.TableName)
{
fieldInput.Enabled = true;
// special lookup distinct
if (fieldInput is ICaisisLookupControl)
(fieldInput as ICaisisLookupControl).LookupDistinct = string.Format("{0};{1};{2}", specimen.TableName, fieldInput.Field, fieldInput.Field);
}
else
{
fieldInput.Enabled = false;
}
}
};
}
/// <summary>
/// When grid is bound, bind organization select in footer row
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
protected void HandleOrgBound(object sender, EventArgs e)
{
ProjectManagementDa projDA = new ProjectManagementDa();
//ProjectOrganization biz = new ProjectOrganization();
//biz.GetAll();
DataView view = projDA.GetAllOrgsByContactId(contactId).DefaultView;
DataView notAssociates = projDA.GetAllUnassociatedOrgsByContact(contactId).DefaultView;
// After Grid has been bound, locate OrgSelects and bind to unassociates organizations
int blankStart = OrgGrid2.Rows.Count - notAssociates.Count;
for (int i = 0; i < OrgGrid2.Rows.Count; i++)
{
GridViewRow row = OrgGrid2.Rows[i];
CaisisSelect OrgSel = row.FindControl("OrgSel") as CaisisSelect;
//CaisisComboBox OrgRoleBlank = row.FindControl("OrgRoleBlank") as CaisisComboBox;
CaisisComboBox CaisisComboOrgRole = row.FindControl("CaisisComboOrgRole") as CaisisComboBox;
ImageButton OrgDelBtn = row.FindControl("OrgDelBtn") as ImageButton;
// Hide delete button from blank rows
if (i >= blankStart)
{
OrgDelBtn.Visible = false;
}
//OrgSel.DataSource = biz.DataSourceView;//view;
OrgSel.DataSource = BusinessObject.GetAllAsDataView <ProjectOrganization>();
OrgSel.DataBind();
// Extract organization ID from grid keys
string orgId = OrgGrid2.DataKeys[i][ProjectOrganization_ProjectContact.OrganizationId].ToString();;
OrgSel.Value = orgId;
if (!string.IsNullOrEmpty(orgId))
{
OrgSel.Enabled = false;
}
}
}
//to check the Type is not null, before Add/Update events in different RowTypes of gridview control
protected void AddClickEventToButtons(object sender, GridViewRowEventArgs e)
{
//adding new event
if (e.Row.RowType == DataControlRowType.EmptyDataRow)
{
ImageButton emptyrowAddBtn = e.Row.FindControl("EvtAdd") as ImageButton;
CaisisComboBox emptyrowevtTest = e.Row.FindControl("EvtTest") as CaisisComboBox;
if (emptyrowAddBtn != null && emptyrowevtTest != null)
{
emptyrowAddBtn.Attributes["onclick"] = "return validateTest('" + emptyrowevtTest.ClientID + "');";
}
}
if (e.Row.RowType == DataControlRowType.DataRow)
{
//delete existing event
ImageButton deleteBtn = e.Row.FindControl("DeleteBtn") as ImageButton;
if (deleteBtn != null)
{
deleteBtn.Attributes["onclick"] = "return confirm('Are you sure you want to delete this event?');";
}
//updating existing event data in edit mode
ImageButton saveBtn = e.Row.FindControl("SaveRowBtn") as ImageButton;
CaisisComboBox evtTest = e.Row.FindControl("EvtTest1") as CaisisComboBox;
if (saveBtn != null && evtTest != null)
{
saveBtn.Attributes["onclick"] = "return validateTest('" + evtTest.ClientID + "');";
}
//getting Specimen Reference # to view report
DataRowView drv = (DataRowView)e.Row.DataItem;
int id = int.Parse(drv["SpecimenId"].ToString());
SpecimenManagerDa da = new SpecimenManagerDa();
string datasetSQL = CacheManager.GetDatasetSQL(Session[SessionKey.DatasetId]);
DataTable dt = da.GetIdentifier(id, _identifierType, datasetSQL);
string str = dt.Rows[0].ItemArray[3].ToString();
string refnum;
//to get the substring of ReferenceNumber removing from first hyphen(-)
if (str.Contains("-"))
{
int index = str.IndexOf(@"-");
refnum = str.Substring(0, index);
}
else
{
refnum = str;
}
//show URL button for only processed aCGH tests
//commented this section temporarily
/*
* string testValue = drv["EventType"].ToString();
* string testProcessedBy = drv["ProcessedBy"].ToString();
*
* Button urlBtn1 = e.Row.FindControl("EvtURL1") as Button;
* if (testValue == "aCGH" && testProcessedBy == "")
* {
* SpecimenEventsGridViewTable.FindControl("hdrRpt").Visible = true;
* SpecimenEventsGridView.Columns[11].Visible = true;
* }
* if (urlBtn1 != null)
* {
* if (testValue == "aCGH" && testProcessedBy == "")
* {
* urlBtn1.Attributes["onclick"] = "window.open('http://aji.cbio.mskcc.org/btc/" + refnum + "/index.html','_new'); return false;";
* urlBtn1.Style["visibility"] = "visible";
* urlBtn1.NamingContainer.Visible = true;
* }
* }
*/
// enable edit click
ImageButton editBtn = e.Row.FindControl("EditImage") as ImageButton;
editBtn.OnClientClick = "enableGridFields(" + e.Row.RowIndex + ");return false;";
}
if (e.Row.RowType == DataControlRowType.Footer)
{
//Adding new event, with some events already existing
ImageButton AddBtn = e.Row.FindControl("EvntAdd1") as ImageButton;
CaisisComboBox footerevtTest = e.Row.FindControl("EvtTest2") as CaisisComboBox;
if (AddBtn != null && footerevtTest != null)
{
AddBtn.Attributes["onclick"] = "return validateTest('" + footerevtTest.ClientID + "');";
}
}
}
private void PopulateSpecimenDetailsRow(Control row, int specimenId)
{
// Core
HiddenField SpecimenNumField = row.FindControl("SpecimenNumField") as HiddenField;
HiddenField SpecimenSubTypeField = row.FindControl("SpecimenSubTypeField") as HiddenField;
CaisisTextBox StatusDate = row.FindControl("StatusDate") as CaisisTextBox;
// Sequencing
CaisisSelect Sequencing_Failed_Reason = row.FindControl("Sequencing_Failed_Reason") as CaisisSelect;
CaisisRadioButtonList Extraction_Radio = row.FindControl("Extraction_Radio") as CaisisRadioButtonList;
CaisisRadioButtonList Library_Radio = row.FindControl("Library_Radio") as CaisisRadioButtonList;
CaisisRadioButtonList Sequenced_Radio = row.FindControl("Sequenced_Radio") as CaisisRadioButtonList;
// Analysis
CaisisRadioButtonList Analysis_Radio = row.FindControl("Analysis_Radio") as CaisisRadioButtonList;
CaisisRadioButtonList Pathology_Radio = row.FindControl("Pathology_Radio") as CaisisRadioButtonList;
// Pathology
CaisisSelect Analysis_Failed_Reason = row.FindControl("Analysis_Failed_Reason") as CaisisSelect;
CaisisComboBox SpecimenConditionNotes = row.FindControl("SpecimenConditionNotes") as CaisisComboBox;
Specimen specimen = new Specimen();
specimen.Get(specimenId);
string num = specimen[BOL.Specimen.SpecimenReferenceNumber].ToString();
string status = specimen[BOL.Specimen.SpecimenStatus].ToString();
string notes = specimen[BOL.Specimen.SpecimenNotes].ToString();
SpecimenNumField.Value = num;
SpecimenSubTypeField.Value = specimen[BOL.Specimen.SpecimenSubType].ToString();
SpecimenEvents specimenEvent = GetSequencingEvent(specimenId);
// applies to all
if (specimenEvent != null)
{
StatusDate.Value = string.Format("{0:d}", specimenEvent[SpecimenEvents.EventDate]);
}
// set relevant radios
if (InventoryMode == SpecimenInventoryMode.Sequencing)
{
switch (status)
{
case "Tissue Extraction Successful":
Extraction_Radio.Value = ANSWER_YES;
break;
case "Tissue Extraction Unsuccessful":
Extraction_Radio.Value = ANSWER_NO;
if (specimenEvent != null && !specimenEvent.IsNull(SpecimenEvents.EventResult))
{
Sequencing_Failed_Reason.Value = specimenEvent[SpecimenEvents.EventResult].ToString();
}
break;
case "Library Construction Successful":
Extraction_Radio.Value = ANSWER_YES;
Library_Radio.Value = ANSWER_YES;
break;
case "Library Construction Unsuccessful":
Extraction_Radio.Value = ANSWER_YES;
Library_Radio.Value = ANSWER_NO;
if (specimenEvent != null && !specimenEvent.IsNull(SpecimenEvents.EventResult))
{
Sequencing_Failed_Reason.Value = specimenEvent[SpecimenEvents.EventResult].ToString();
}
break;
case "Sequenced":
Extraction_Radio.Value = ANSWER_YES;
Library_Radio.Value = ANSWER_YES;
Sequenced_Radio.Value = ANSWER_YES;
break;
case "Sequencing Unsuccessful":
Extraction_Radio.Value = ANSWER_YES;
Library_Radio.Value = ANSWER_YES;
Sequenced_Radio.Value = ANSWER_NO;
if (specimenEvent != null && !specimenEvent.IsNull(SpecimenEvents.EventResult))
{
Sequencing_Failed_Reason.Value = specimenEvent[SpecimenEvents.EventResult].ToString();
}
break;
default:
Extraction_Radio.ClearSelection();
Library_Radio.ClearSelection();
Sequenced_Radio.ClearSelection();
break;
}
}
else if (InventoryMode == SpecimenInventoryMode.Analysis)
{
switch (status)
{
case "Analysis Complete":
Analysis_Radio.Value = ANSWER_YES;
break;
case "Analysis Unsuccessul":
Analysis_Radio.Value = ANSWER_NO;
if (specimenEvent != null && !specimenEvent.IsNull(SpecimenEvents.EventResult))
{
Analysis_Failed_Reason.Value = specimenEvent[SpecimenEvents.EventResult].ToString();
}
break;
default:
Analysis_Radio.ClearSelection();
break;
}
}
else if (InventoryMode == SpecimenInventoryMode.Pathology)
{
switch (status)
{
case "Pathology Review Completed":
Pathology_Radio.Value = ANSWER_YES;
break;
case "Banked by Pathology":
Pathology_Radio.Value = ANSWER_NO;
break;
default:
Pathology_Radio.ClearSelection();
break;
}
// build condition list, fill into notes field
DataTable conditions = new DataTable();
conditions.Columns.Add("Condition");
string foundCondition = "";
foreach (string condition in specimenController.GetConditions())
{
// find selected
if (specimenController.GetSpecimenCondition(notes) == condition)
{
foundCondition = condition;
}
// add data
conditions.Rows.Add(new object[] { condition });
}
SpecimenConditionNotes.BuildComboData(conditions, "Condition", "Condition");
SpecimenConditionNotes.Value = notes;
}
}
private void UpdateSpecimenDetailsRow(Control row, int specimenId)
{
// Core
HiddenField SpecimenNumField = row.FindControl("SpecimenNumField") as HiddenField;
HiddenField SpecimenSubTypeField = row.FindControl("SpecimenSubTypeField") as HiddenField;
CaisisTextBox StatusDate = row.FindControl("StatusDate") as CaisisTextBox;
// Sequencing
CaisisSelect Sequencing_Failed_Reason = row.FindControl("Sequencing_Failed_Reason") as CaisisSelect;
CaisisRadioButtonList Extraction_Radio = row.FindControl("Extraction_Radio") as CaisisRadioButtonList;
CaisisRadioButtonList Library_Radio = row.FindControl("Library_Radio") as CaisisRadioButtonList;
CaisisRadioButtonList Sequenced_Radio = row.FindControl("Sequenced_Radio") as CaisisRadioButtonList;
// Analysis
CaisisRadioButtonList Analysis_Radio = row.FindControl("Analysis_Radio") as CaisisRadioButtonList;
CaisisRadioButtonList Pathology_Radio = row.FindControl("Pathology_Radio") as CaisisRadioButtonList;
// Pathology
CaisisSelect Analysis_Failed_Reason = row.FindControl("Analysis_Failed_Reason") as CaisisSelect;
CaisisComboBox SpecimenConditionNotes = row.FindControl("SpecimenConditionNotes") as CaisisComboBox;
// shared variables
string status = "";
DateTime?statusDate = null;
if (!string.IsNullOrEmpty(StatusDate.Value))
{
statusDate = DateTime.Parse(StatusDate.Value);
}
if (InventoryMode == SpecimenInventoryMode.Sequencing)
{
string failedReason = Sequencing_Failed_Reason.Value;
string statusResult = "";
// determine new status, top down
if (Extraction_Radio.Value == ANSWER_NO)
{
status = "Tissue Extraction Unsuccessful";
statusResult = failedReason;
}
else if (Extraction_Radio.Value == ANSWER_YES)
{
if (Library_Radio.Value == ANSWER_NO)
{
status = "Library Construction Unsuccessful";
statusResult = failedReason;
}
else if (Library_Radio.Value == ANSWER_YES)
{
if (Sequenced_Radio.Value == ANSWER_NO)
{
status = "Sequencing Unsuccessful";
statusResult = failedReason;
}
else if (Sequenced_Radio.Value == ANSWER_YES)
{
status = "Sequenced";
}
else
{
status = "Library Construction Successful";
}
}
else
{
status = "Tissue Extraction Successful";
}
}
// update event
if (!string.IsNullOrEmpty(status) || statusDate.HasValue || !string.IsNullOrEmpty(statusResult))
{
UpdateSequencingEvent(specimenId, status, statusDate, statusResult);
}
}
else if (InventoryMode == SpecimenInventoryMode.Pathology)
{
if (Pathology_Radio.Value == ANSWER_YES)
{
status = "Pathology Review Completed";
}
else if (Analysis_Radio.Value == ANSWER_NO)
{
status = "Banked by Pathology";
}
// update event
if (!string.IsNullOrEmpty(status) || statusDate.HasValue)
{
UpdateSequencingEvent(specimenId, status, statusDate, "");
}
}
else if (InventoryMode == SpecimenInventoryMode.Analysis)
{
string failedReason = Analysis_Failed_Reason.Value;
if (Analysis_Radio.Value == ANSWER_YES)
{
status = "Analysis Complete";
// on successful analysis, update event
UpdateSequencingEvent(specimenId, status, statusDate, "");
}
else if (Analysis_Radio.Value == ANSWER_NO)
{
status = "Analysis Unsuccessul";
UpdateSequencingEvent(specimenId, status, statusDate, failedReason);
}
}
// update specimen status
if (!string.IsNullOrEmpty(status))
{
Specimen specimen = new Specimen();
specimen.Get(specimenId);
specimen[Specimen.SpecimenStatus] = status;
// special case
if (InventoryMode == SpecimenInventoryMode.Pathology)
{
specimen[Specimen.SpecimenNotes] = SpecimenConditionNotes.Value;
}
specimen.Save();
}
}
