public void Add(MassSpectrum spectrum)
{
SpectrumDataSet.SpectrumTableRow row = spectrumDataSet.SpectrumTable.NewSpectrumTableRow();
row.Id = spectrum.Id;
if (nativeIdFormat != CVID.CVID_Unknown)
{
gridView.Columns["Id"].Visible = false;
// guard against case where input is mzXML which
// is identified as, say, Agilent-derived, but
// which uses "scan" (as mzXML must) instead
// of the Agilent "scanID" (as this mzML-centric code expects)
bool foundit = false;
string[] nameValuePairs = spectrum.Id.Split(' ');
foreach (string nvp in nameValuePairs)
{
string[] nameValuePair = nvp.Split('=');
if (row.Table.Columns.Contains(nameValuePair[0]))
{
row[nameValuePair[0]] = nameValuePair[1];
foundit = true;
}
}
if (!foundit)
{
// mismatch between nativeID format and actual (probably mzXML) format
// better to show an ill-fit match - eg "scan" (mzXML) and "scanID" (Agilent)
// than no info at all
string nativeIdDefinition = new CVTermInfo(nativeIdFormat).def;
string[] idPair = nativeIdDefinition.Split('=');
if (row.Table.Columns.Contains(idPair[0]))
{
string[] valPair = spectrum.Id.Split('=');
row[idPair[0]] = (valPair.Length > 1) ? valPair[1] : spectrum.Id;
foundit = true;
}
}
}
row.Index = spectrum.Index;
updateRow(row, spectrum);
spectrumDataSet.SpectrumTable.AddSpectrumTableRow(row);
//int rowIndex = gridView.Rows.Add();
//gridView.Rows[rowIndex].Tag = spectrum;
spectrum.Tag = this;
if (spectrum.Element.spotID.Length > 0)
{
gridView.Columns["SpotId"].Visible = true;
}
//UpdateRow( rowIndex );
}
private void initializeGridView(CVID nativeIdFormat)
{
// force handle creation
IntPtr dummy = gridView.Handle;
spectrumList = new Dictionary <int, MassSpectrum>();
this.nativeIdFormat = nativeIdFormat;
if ((nativeIdFormat != CVID.CVID_Unknown) && (nativeIdFormat != CVID.MS_no_nativeID_format))
{
string nativeIdDefinition = new CVTermInfo(nativeIdFormat).def.Replace("Native format defined by ", "");
string[] nameValuePairs = nativeIdDefinition.Split(" ".ToCharArray());
for (int i = 0; i < nameValuePairs.Length; ++i)
{
string[] nameValuePair = nameValuePairs[i].Split("=".ToCharArray());
DataGridViewColumn nameColumn = new DataGridViewAutoFilter.DataGridViewAutoFilterTextBoxColumn();
nameColumn.Name = nameValuePair[0] + "NativeIdColumn";
nameColumn.HeaderText = System.Globalization.CultureInfo.CurrentCulture.TextInfo.ToTitleCase(nameValuePair[0]);
nameColumn.DataPropertyName = nameValuePair[0];
gridView.Columns.Insert(1 + i, nameColumn);
string type = null;
if (nameValuePair[0] == "file" || nameValuePair[1] == "xsd:string")
{
type = "System.String";
}
else
{
type = "System.Int32";
}
spectrumDataSet.SpectrumTable.Columns.Add(nameValuePair[0], Type.GetType(type));
}
}
gridView.Columns["SpectrumType"].ToolTipText = new CVTermInfo(CVID.MS_spectrum_type).def;
gridView.Columns["MsLevel"].ToolTipText = new CVTermInfo(CVID.MS_ms_level).def;
gridView.Columns["ScanTime"].ToolTipText = new CVTermInfo(CVID.MS_scan_start_time).def;
gridView.Columns["BasePeakMz"].ToolTipText = new CVTermInfo(CVID.MS_base_peak_m_z).def;
gridView.Columns["BasePeakIntensity"].ToolTipText = new CVTermInfo(CVID.MS_base_peak_intensity).def;
gridView.Columns["TotalIonCurrent"].ToolTipText = new CVTermInfo(CVID.MS_total_ion_current).def;
gridView.Columns["ScanTime"].HeaderText += Properties.Settings.Default.TimeInMinutes ? " (min)" : " (sec)";
gridView.DataBindingComplete += new DataGridViewBindingCompleteEventHandler(gridView_DataBindingComplete);
}
private void initializeGridView( CVID nativeIdFormat )
{
// force handle creation
IntPtr dummy = gridView.Handle;
spectrumList = new Dictionary<int, MassSpectrum>();
this.nativeIdFormat = nativeIdFormat;
if ((nativeIdFormat != CVID.CVID_Unknown) && (nativeIdFormat != CVID.MS_no_nativeID_format))
{
string nativeIdDefinition = new CVTermInfo( nativeIdFormat ).def.Replace("Native format defined by ", "");
string[] nameValuePairs = nativeIdDefinition.Split( " ".ToCharArray() );
for( int i = 0; i < nameValuePairs.Length; ++i )
{
string[] nameValuePair = nameValuePairs[i].Split( "=".ToCharArray() );
DataGridViewColumn nameColumn = new DataGridViewAutoFilter.DataGridViewAutoFilterTextBoxColumn();
nameColumn.Name = nameValuePair[0];
nameColumn.HeaderText = System.Globalization.CultureInfo.CurrentCulture.TextInfo.ToTitleCase( nameValuePair[0] );
nameColumn.DataPropertyName = nameValuePair[0];
gridView.Columns.Insert( 1 + i, nameColumn );
string type = null;
if( nameValuePair[0] == "file" )
type = "System.String";
else
type = "System.Int32";
spectrumDataSet.SpectrumTable.Columns.Add( nameValuePair[0], Type.GetType( type ) );
}
}
gridView.Columns["SpectrumType"].ToolTipText = new CVTermInfo(CVID.MS_spectrum_type).def;
gridView.Columns["MsLevel"].ToolTipText = new CVTermInfo( CVID.MS_ms_level ).def;
gridView.Columns["ScanTime"].ToolTipText = new CVTermInfo( CVID.MS_scan_start_time ).def;
gridView.Columns["BasePeakMz"].ToolTipText = new CVTermInfo( CVID.MS_base_peak_m_z ).def;
gridView.Columns["BasePeakIntensity"].ToolTipText = new CVTermInfo( CVID.MS_base_peak_intensity ).def;
gridView.Columns["TotalIonCurrent"].ToolTipText = new CVTermInfo( CVID.MS_total_ion_current ).def;
gridView.DataBindingComplete += new DataGridViewBindingCompleteEventHandler( gridView_DataBindingComplete );
}
public void Add( MassSpectrum spectrum )
{
SpectrumDataSet.SpectrumTableRow row = spectrumDataSet.SpectrumTable.NewSpectrumTableRow();
row.Id = spectrum.Id;
if( nativeIdFormat != CVID.CVID_Unknown )
{
gridView.Columns["Id"].Visible = false;
// guard against case where input is mzXML which
// is identified as, say, Agilent-derived, but
// which uses "scan" (as mzXML must) instead
// of the Agilent "scanID" (as this mzML-centric code expects)
bool foundit = false;
string[] nameValuePairs = spectrum.Id.Split(' ');
foreach( string nvp in nameValuePairs )
{
string[] nameValuePair = nvp.Split('=');
if (row.Table.Columns.Contains(nameValuePair[0]))
{
row[nameValuePair[0]] = nameValuePair[1];
foundit = true;
}
}
if (!foundit)
{
// mismatch between nativeID format and actual (probably mzXML) format
// better to show an ill-fit match - eg "scan" (mzXML) and "scanID" (Agilent)
// than no info at all
string nativeIdDefinition = new CVTermInfo(nativeIdFormat).def;
string[] idPair = nativeIdDefinition.Split('=');
if (row.Table.Columns.Contains(idPair[0]))
{
string[] valPair = spectrum.Id.Split('=');
row[idPair[0]] = (valPair.Length > 1) ? valPair[1] : spectrum.Id;
foundit = true;
}
}
}
row.Index = spectrum.Index;
updateRow( row, spectrum );
spectrumDataSet.SpectrumTable.AddSpectrumTableRow( row );
//int rowIndex = gridView.Rows.Add();
//gridView.Rows[rowIndex].Tag = spectrum;
spectrum.Tag = this;
if( spectrum.Element.spotID.Length > 0 )
gridView.Columns["SpotId"].Visible = true;
//UpdateRow( rowIndex );
}
