public void test_CVTerm_setModelQualifierType()
{
CVTerm term = new CVTerm(libsbml.MODEL_QUALIFIER);
assertTrue(term != null);
assertTrue(term.getQualifierType() == libsbml.MODEL_QUALIFIER);
assertTrue(term.getModelQualifierType() == libsbml.BQM_UNKNOWN);
assertTrue(term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN);
int i = term.setModelQualifierType(libsbml.BQM_IS);
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertTrue(term.getQualifierType() == libsbml.MODEL_QUALIFIER);
assertTrue(term.getModelQualifierType() == libsbml.BQM_IS);
assertTrue(term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN);
i = term.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER);
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertTrue(term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER);
assertTrue(term.getModelQualifierType() == libsbml.BQM_UNKNOWN);
assertTrue(term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN);
i = term.setModelQualifierType(libsbml.BQM_IS);
assertTrue(i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE);
assertTrue(term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER);
assertTrue(term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN);
assertTrue(term.getModelQualifierType() == libsbml.BQM_UNKNOWN);
term = null;
}
public void test_Validation_CVTerm1()
{
CVTerm cv = new CVTerm();
assertTrue(cv != null);
assertEquals(false, (cv.hasRequiredAttributes()));
cv.setQualifierType(libsbml.MODEL_QUALIFIER);
assertEquals(false, (cv.hasRequiredAttributes()));
cv.setModelQualifierType(libsbml.BQM_IS);
assertEquals(false, (cv.hasRequiredAttributes()));
cv.addResource("ggg");
assertEquals(true, (cv.hasRequiredAttributes()));
cv = null;
}
public void test_RDFAnnotation_testMissingMetaId()
{
SBMLDocument doc = new SBMLDocument ( 3,1 );
Model model = doc.createModel();
assertTrue( model != null );
model.setId("test1");
CVTerm term = new CVTerm ( libsbml.MODEL_QUALIFIER );
term.addResource("testResource");
term.setModelQualifierType(libsbml.BQM_IS);
model.setMetaId("t1");
model.addCVTerm(term);
model.setMetaId("");
string test = model.toSBML();
assertTrue( test == "<model id=\"test1\"/>" );
}
public void test_CVTerm_set_get()
{
CVTerm term = new CVTerm(libsbml.MODEL_QUALIFIER);
assertTrue(term != null);
assertTrue(term.getQualifierType() == libsbml.MODEL_QUALIFIER);
term.setModelQualifierType(libsbml.BQM_IS);
assertTrue(term != null);
assertTrue(term.getQualifierType() == libsbml.MODEL_QUALIFIER);
assertTrue(term.getModelQualifierType() == libsbml.BQM_IS);
term.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER);
term.setBiologicalQualifierType(libsbml.BQB_IS);
assertTrue(term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER);
assertTrue(term.getBiologicalQualifierType() == libsbml.BQB_IS);
term = null;
}
public void test_RDFAnnotation_parseCVTerms()
{
XMLNode node = RDFAnnotationParser.parseCVTerms(m.getCompartment(0));
assertTrue(node.getNumChildren() == 1);
XMLNode rdf = node.getChild(0);
assertTrue(("RDF" == rdf.getName()));
assertTrue(("rdf" == rdf.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI()));
assertTrue(rdf.getNumChildren() == 1);
XMLNode desc = rdf.getChild(0);
assertTrue(("Description" == desc.getName()));
assertTrue(("rdf" == desc.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI()));
assertTrue(desc.getNumChildren() == 1);
XMLNode is1 = desc.getChild(0);
assertTrue(("is" == is1.getName()));
assertTrue(("bqbiol" == is1.getPrefix()));
assertTrue(is1.getNumChildren() == 1);
XMLNode Bag = is1.getChild(0);
assertTrue(("Bag" == Bag.getName()));
assertTrue(("rdf" == Bag.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI()));
assertTrue(Bag.getNumChildren() == 4);
XMLNode li = Bag.getChild(0);
assertTrue(("li" == li.getName()));
assertTrue(("rdf" == li.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI()));
assertTrue(li.getNumChildren() == 0);
XMLNode li1 = Bag.getChild(1);
assertTrue(("li" == li1.getName()));
assertTrue(("rdf" == li1.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li1.getURI()));
assertTrue(li1.getNumChildren() == 0);
XMLNode li2 = Bag.getChild(2);
assertTrue(("li" == li2.getName()));
assertTrue(("rdf" == li2.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li2.getURI()));
assertTrue(li2.getNumChildren() == 0);
XMLNode li3 = Bag.getChild(3);
assertTrue(("li" == li3.getName()));
assertTrue(("rdf" == li3.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li3.getURI()));
assertTrue(li3.getNumChildren() == 0);
node = null;
XMLNode node1 = RDFAnnotationParser.parseCVTerms(null);
assertTrue(node1 == null);
node1 = RDFAnnotationParser.createCVTerms(null);
assertTrue(node1 == null);
node1 = RDFAnnotationParser.parseCVTerms(m.getCompartment(2));
assertTrue(node1 == null);
node1 = RDFAnnotationParser.createCVTerms(m.getCompartment(2));
assertTrue(node1 == null);
node1 = RDFAnnotationParser.parseCVTerms(m);
assertTrue(node1 == null);
node1 = RDFAnnotationParser.createCVTerms(m);
assertTrue(node1 == null);
Compartment c = new Compartment(3, 1);
c.setMetaId("_002");
node1 = RDFAnnotationParser.parseCVTerms(c);
assertTrue(node1 == null);
node1 = RDFAnnotationParser.createCVTerms(c);
assertTrue(node1 == null);
CVTerm cv = new CVTerm(libsbml.BIOLOGICAL_QUALIFIER);
cv.setBiologicalQualifierType(23);
cv.addResource("http://myres");
c.addCVTerm(cv);
node1 = RDFAnnotationParser.createCVTerms(c);
assertTrue(node1 == null);
c = null;
Model m1 = new Model(3, 1);
m1.setMetaId("_002");
cv = new CVTerm(libsbml.MODEL_QUALIFIER);
cv.setModelQualifierType(23);
cv.addResource("http://myres");
m1.addCVTerm(cv);
node1 = RDFAnnotationParser.createCVTerms(m1);
assertTrue(node1 == null);
}