public DiagnosticLine(Point startPoint, Point endPoint, BondLineStyle style, string colour = "000000")
{
Start = startPoint;
End = endPoint;
Style = style;
Colour = colour;
}
public BondLine(BondLineStyle style, Point startPoint, Point endPoint, Bond bond)
{
Style = style;
_start = startPoint;
_end = endPoint;
Bond = bond;
}
public static void ResetBondDisplay()
{
UIData.resetBondDisplay = false;
DestroyBondObject();
if (UIData.bondtype == UIData.BondType.cube || UIData.bondtype == UIData.BondType.hyperstick || UIData.bondtype == UIData.BondType.bbhyperstick)
{
IBondStyle displayBond = new BondCubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.line)
{
IBondStyle displayBond = new BondLineStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.tubestick)
{
IBondStyle displayBond = new BondTubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.particlestick)
{
IBondStyle displayBond = new BondParticleStyle();
displayBond.DisplayBonds();
}
// else if(UIData.bondtype==UIData.BondType.nobond) {}
CreatBondGameObjectArray();
if (UIData.bondtype == UIData.BondType.cube || UIData.bondtype == UIData.BondType.hyperstick || UIData.bondtype == UIData.BondType.bbhyperstick)
{
GameObject hbManagerObj = GameObject.FindGameObjectWithTag("HBallManager");
HBallManager hbManager = hbManagerObj.GetComponent <HBallManager>();
hbManager.findBonds();
}
}
public BondLine(Point startPoint, Point endPoint, BondLineStyle type, string parent)
{
_start = startPoint;
_end = endPoint;
BoundingBox = new Rect(startPoint, endPoint);
Type = type;
Parent = parent;
}
public static void ResetDisplay()
{
DestroyObject();
IAtomStyle displayAtom;
// In case we changed the color of the atoms,
// we destroy the "permanent" particles and create new ones with the new colors
if (UIData.isConfirm || UIData.changeStructure)
{
// DestroyParticles();
displayAtom = new AtomCubeStyle();
displayAtom.DisplayAtoms(UIData.atomtype, true);
// displayAtom.DisplayAtoms(UIData.AtomType.particleball,true);
}
displayAtom = new AtomCubeStyle();
displayAtom.DisplayAtoms(UIData.atomtype);
Debug.Log(UIData.atomtype);
// This fixes a nasty bug that made carbon alpha chains/entire molecules disappear when switching between the two in sphere mode
if (UIData.atomtype == UIData.AtomType.sphere)
{
UIData.isCubeToSphere = true;
UIData.isSphereToCube = false;
}
else if (UIData.atomtype == UIData.AtomType.cube)
{
UIData.isCubeToSphere = false;
UIData.isSphereToCube = true;
}
if (UIData.bondtype == UIData.BondType.cube || UIData.bondtype == UIData.BondType.hyperstick || UIData.bondtype == UIData.BondType.bbhyperstick)
{
IBondStyle displayBond = new BondCubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.line)
{
IBondStyle displayBond = new BondLineStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.tubestick)
{
IBondStyle displayBond = new BondTubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.particlestick)
{
IBondStyle displayBond = new BondParticleStyle();
displayBond.DisplayBonds();
}
CreatGameObjectArray();
}
public BondLine(Point startPoint, Point endPoint, BondLineStyle type, string parentBond, string parentMolecule, string startAtomId, string endAtomId)
{
_start = startPoint;
_end = endPoint;
BoundingBox = new Rect(startPoint, endPoint);
Type = type;
ParentBond = parentBond;
ParentMolecule = parentMolecule;
StartAtomId = startAtomId;
EndAtomId = endAtomId;
}
public BondLine(BondLineStyle style, Bond bond)
{
Style = style;
Bond = bond;
if (bond != null)
{
Start = bond.StartAtom.Position;
End = bond.EndAtom.Position;
}
}
public static void Display()
{
// UIData.EnableUpdate=false;
IAtomStyle displayAtom;
if (UIData.isSphereToCube)
{
displayAtom = new AtomCubeStyle();
Debug.Log("DisplayMolecule.Display(): New atom cube style");
}
else
{
displayAtom = new AtomSphereStyle();
Debug.Log("DisplayMolecule.Display(): New atom sphere style");
}
Debug.Log("DisplayAtoms here DisplayAtoms here DisplayAtoms here DisplayAtoms here");
displayAtom.DisplayAtoms(UIData.atomtype);
if (UIData.bondtype == UIData.BondType.cube || UIData.bondtype == UIData.BondType.hyperstick || UIData.bondtype == UIData.BondType.bbhyperstick)
{
IBondStyle displayBond = new BondCubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.line)
{
IBondStyle displayBond = new BondLineStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.tubestick)
{
IBondStyle displayBond = new BondTubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.particlestick)
{
IBondStyle displayBond = new BondParticleStyle();
displayBond.DisplayBonds();
}
CreatGameObjectArray();
CheckResidues();
if (GUIMoleculeController.HYPERBALLSDEFAULT)
{
GUIMoleculeController.toggle_NA_HBALLSMOOTH = !GUIMoleculeController.toggle_NA_HBALLSMOOTH;
UIData.hballsmoothmode = GUIMoleculeController.toggle_NA_HBALLSMOOTH;
}
UIData.hasMoleculeDisplay = true;
// UIData.EnableUpdate=true;
}
public static void CubeToSphere()
{
UIData.resetDisplay = false;
// DestroyObject();
HideObject();
if (UIData.atomtype == UIData.AtomType.sphere)
{
GameObject spmObject = GameObject.FindGameObjectWithTag("SphereManager");
SphereManager spManager = spmObject.GetComponent <SphereManager>();
spManager.EnableRenderers();
}
if (!UIData.isSphereLoaded)
{
IAtomStyle displayAtom;
Debug.Log("UIData.atomtype :: " + UIData.atomtype);
displayAtom = new AtomSphereStyle();
displayAtom.DisplayAtoms(UIData.atomtype);
}
if (UIData.bondtype == UIData.BondType.cube || UIData.bondtype == UIData.BondType.hyperstick || UIData.bondtype == UIData.BondType.bbhyperstick)
{
IBondStyle displayBond = new BondCubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.line)
{
IBondStyle displayBond = new BondLineStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.tubestick)
{
IBondStyle displayBond = new BondTubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.particlestick)
{
IBondStyle displayBond = new BondParticleStyle();
displayBond.DisplayBonds();
}
CreatGameObjectArray();
BallUpdate.resetRadii = true;
//BallUpdate.resetColors = true;
Debug.Log("Exiting :: CubeToSphere");
}
public static void SphereToCube()
{
UIData.resetDisplay = false;
// DestroyObject();
HideObject();
if (UIData.atomtype == UIData.AtomType.cube)
{
GameObject cbmObject = GameObject.FindGameObjectWithTag("CubeManager");
CubeManager cbManager = cbmObject.GetComponent <CubeManager>();
cbManager.EnableRenderers();
if (!UIData.isCubeLoaded)
{
IAtomStyle displayAtom;
Debug.Log("UIData.atomtype :: " + UIData.atomtype);
displayAtom = new AtomCubeStyle();
displayAtom.DisplayAtoms(UIData.atomtype);
}
}
else if (UIData.atomtype == UIData.AtomType.hyperball)
{
GameObject hbmObject = GameObject.FindGameObjectWithTag("HBallManager");
HBallManager hbManager = hbmObject.GetComponent <HBallManager>();
hbManager.EnableRenderers();
if (!UIData.isHBallLoaded)
{
IAtomStyle displayAtom;
Debug.Log("UIData.atomtype :: " + UIData.atomtype);
displayAtom = new AtomCubeStyle();
displayAtom.DisplayAtoms(UIData.atomtype);
}
}
if (UIData.bondtype == UIData.BondType.cube || UIData.bondtype == UIData.BondType.hyperstick || UIData.bondtype == UIData.BondType.bbhyperstick)
{
IBondStyle displayBond = new BondCubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.line)
{
IBondStyle displayBond = new BondLineStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.tubestick)
{
IBondStyle displayBond = new BondTubeStyle();
displayBond.DisplayBonds();
}
else if (UIData.bondtype == UIData.BondType.particlestick)
{
IBondStyle displayBond = new BondParticleStyle();
displayBond.DisplayBonds();
}
CreatGameObjectArray();
BallUpdate.resetRadii = true;
//BallUpdate.resetColors = true;
Debug.Log("Exiting :: SphereToCube");
}
public BondLine(BondLineStyle style, Point startPoint, Point endPoint, Bond bond)
: this(style, startPoint, endPoint)
{
Bond = bond;
}
public void SetLineStyle(BondLineStyle style)
{
Style = style;
}
private BondLine(BondLineStyle style, Point startPoint, Point endPoint)
{
Style = style;
Start = startPoint;
End = endPoint;
}
public BondLine(BondLineStyle style, Point startPoint, Point endPoint)
{
Style = style;
_start = startPoint;
_end = endPoint;
}
