private void AreComponentTestOrdersFinal(AccessionOrder accessionOrder, Audit.Model.AuditResult result)
{
YellowstonePathology.Business.Test.PDL122C3.PDL122C3Test pdl122C3Test = new PDL122C3.PDL122C3Test();
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTest ros1ByfishTest = new ROS1ByFISH.ROS1ByFISHTest();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafTest = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
YellowstonePathology.Business.Test.PDL1SP142.PDL1SP142Test pdl1SP142Test = new PDL1SP142.PDL1SP142Test();
if (accessionOrder.PanelSetOrderCollection.Exists(pdl122C3Test.PanelSetId) == true)
{
Test.PDL122C3.PDL122C3TestOrder pdl122C3TestOrder = (PDL122C3.PDL122C3TestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(pdl122C3Test.PanelSetId);
if (pdl122C3TestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(pdl122C3TestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true)
{
Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(egfrMutationAnalysisTest.PanelSetId);
if (egfrMutationAnalysisTestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(egfrMutationAnalysisTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(ros1ByfishTest.PanelSetId) == true)
{
Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (ROS1ByFISH.ROS1ByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(ros1ByfishTest.PanelSetId);
if (ros1ByFISHTestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(ros1ByFISHTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(alkTest.PanelSetId) == true)
{
Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkTestOrder = (ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(alkTest.PanelSetId);
if (alkTestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(alkTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(brafTest.PanelSetId) == true)
{
Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder brafTestOrder = (BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(brafTest.PanelSetId);
if (brafTestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(brafTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(pdl1SP142Test.PanelSetId) == true)
{
Test.PDL1SP142.PDL1SP142TestOrder pdl1SP142TestOrder = (PDL1SP142.PDL1SP142TestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(pdl1SP142Test.PanelSetId);
if (pdl1SP142TestOrder.Final == false)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFinaledMessage(pdl1SP142TestOrder.PanelSetName);
}
}
}
private void AreTestResultsPresent(AccessionOrder accessionOrder, Audit.Model.AuditResult result)
{
YellowstonePathology.Business.Test.PDL122C3.PDL122C3Test pdl122C3Test = new PDL122C3.PDL122C3Test();
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTest ros1ByfishTest = new ROS1ByFISH.ROS1ByFISHTest();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafTest = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
YellowstonePathology.Business.Test.PDL1SP142.PDL1SP142Test pdl1SP142Test = new PDL1SP142.PDL1SP142Test();
if (accessionOrder.PanelSetOrderCollection.Exists(pdl122C3Test.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_PDL122C3Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("PDL122C3Result");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_EGFRMutationAnalysisResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("EGFRMutationAnalysisResult");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(ros1ByfishTest.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_ROS1ByFISHResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("ROS1ByFISHResult");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(alkTest.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_ALKForNSCLCByFISHResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("ALKForNSCLCByFISHResult");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(brafTest.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_BRAFMutationAnalysisResult) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("BRAFMutationAnalysisResult");
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(pdl1SP142Test.PanelSetId) == true)
{
if (string.IsNullOrEmpty(this.m_PDL1SP142Result) == true)
{
result.Status = Audit.Model.AuditStatusEnum.Failure;
result.Message += NotFilledMessage("PDL1SP142Result");
}
}
}
private void DoComponentTestResultsMatchPreviousResults(AccessionOrder accessionOrder, EGFRToALKReflexAnalysisTestOrder panelSetOrder, Audit.Model.AuditResult result)
{
YellowstonePathology.Business.Test.PDL122C3.PDL122C3Test pdl122C3Test = new PDL122C3.PDL122C3Test();
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTest ros1ByfishTest = new ROS1ByFISH.ROS1ByFISHTest();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafTest = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
YellowstonePathology.Business.Test.PDL1SP142.PDL1SP142Test pdl1SP142Test = new PDL1SP142.PDL1SP142Test();
if (accessionOrder.PanelSetOrderCollection.Exists(pdl122C3Test.PanelSetId) == true)
{
Test.PDL122C3.PDL122C3TestOrder pdl122C3TestOrder = (PDL122C3.PDL122C3TestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(pdl122C3Test.PanelSetId);
if (pdl122C3TestOrder.Result != panelSetOrder.PDL122C3Result)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(pdl122C3TestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true)
{
Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(egfrMutationAnalysisTest.PanelSetId);
if (egfrMutationAnalysisTestOrder.Result != panelSetOrder.EGFRMutationAnalysisResult)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(egfrMutationAnalysisTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(ros1ByfishTest.PanelSetId) == true)
{
Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (ROS1ByFISH.ROS1ByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(ros1ByfishTest.PanelSetId);
if (ros1ByFISHTestOrder.Result != panelSetOrder.ROS1ByFISHResult)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(ros1ByFISHTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(alkTest.PanelSetId) == true)
{
Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkTestOrder = (ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(alkTest.PanelSetId);
if (alkTestOrder.Result != panelSetOrder.ALKForNSCLCByFISHResult)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(alkTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(brafTest.PanelSetId) == true)
{
Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder brafTestOrder = (BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(brafTest.PanelSetId);
if (brafTestOrder.Result != panelSetOrder.BRAFMutationAnalysisResult)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(brafTestOrder.PanelSetName);
}
}
if (accessionOrder.PanelSetOrderCollection.Exists(pdl1SP142Test.PanelSetId) == true)
{
Test.PDL1SP142.PDL1SP142TestOrder pdl1SP142TestOrder = (PDL1SP142.PDL1SP142TestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(pdl1SP142Test.PanelSetId);
if (pdl1SP142TestOrder.Result != panelSetOrder.PDL1SP142Result)
{
result.Status = Audit.Model.AuditStatusEnum.Warning;
result.Message += MismatchMessage(pdl1SP142TestOrder.PanelSetName);
}
}
}
public override void OrderInitialTests(YellowstonePathology.Business.Test.AccessionOrder accessionOrder, YellowstonePathology.Business.Interface.IOrderTarget orderTarget)
{
YellowstonePathology.Business.Test.PDL122C3.PDL122C3Test pdl122C3Test = new PDL122C3.PDL122C3Test();
if (accessionOrder.PanelSetOrderCollection.Exists(pdl122C3Test.PanelSetId, orderTarget.GetId(), true) == false)
{
YellowstonePathology.Business.Test.TestOrderInfo testOrderInfoPDL122C3 = new TestOrderInfo(pdl122C3Test, orderTarget, false);
YellowstonePathology.Business.Visitor.OrderTestOrderVisitor orderTestOrderVisitorPDL122C3 = new Visitor.OrderTestOrderVisitor(testOrderInfoPDL122C3);
accessionOrder.TakeATrip(orderTestOrderVisitorPDL122C3);
}
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId, orderTarget.GetId(), true) == false)
{
YellowstonePathology.Business.Test.TestOrderInfo testOrderInfoEGFR = new TestOrderInfo(egfrMutationAnalysisTest, orderTarget, false);
YellowstonePathology.Business.Visitor.OrderTestOrderVisitor orderTestOrderVisitorEGFR = new Visitor.OrderTestOrderVisitor(testOrderInfoEGFR);
accessionOrder.TakeATrip(orderTestOrderVisitorEGFR);
}
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTest ros1ByfishTest = new ROS1ByFISH.ROS1ByFISHTest();
if (accessionOrder.PanelSetOrderCollection.Exists(ros1ByfishTest.PanelSetId, orderTarget.GetId(), true) == false)
{
YellowstonePathology.Business.Test.TestOrderInfo testOrderInfoRos1 = new TestOrderInfo(ros1ByfishTest, orderTarget, false);
YellowstonePathology.Business.Visitor.OrderTestOrderVisitor orderTestOrderVisitorRos1 = new Visitor.OrderTestOrderVisitor(testOrderInfoRos1);
accessionOrder.TakeATrip(orderTestOrderVisitorRos1);
}
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
if (accessionOrder.PanelSetOrderCollection.Exists(alkTest.PanelSetId, orderTarget.GetId(), true) == false)
{
YellowstonePathology.Business.Test.TestOrderInfo testOrderInfoALK = new TestOrderInfo(alkTest, orderTarget, false);
YellowstonePathology.Business.Visitor.OrderTestOrderVisitor orderTestOrderVisitorALK = new Visitor.OrderTestOrderVisitor(testOrderInfoALK);
accessionOrder.TakeATrip(orderTestOrderVisitorALK);
}
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafTest = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
if (accessionOrder.PanelSetOrderCollection.Exists(brafTest.PanelSetId, orderTarget.GetId(), true) == false)
{
YellowstonePathology.Business.Test.TestOrderInfo testOrderInfoBRAF = new TestOrderInfo(brafTest, orderTarget, false);
YellowstonePathology.Business.Visitor.OrderTestOrderVisitor orderTestOrderVisitorBRAF = new Visitor.OrderTestOrderVisitor(testOrderInfoBRAF);
accessionOrder.TakeATrip(orderTestOrderVisitorBRAF);
}
}
public void SetResults(PanelSetOrderCollection panelSetOrderCollection)
{
StringBuilder interpretation = new StringBuilder();
StringBuilder method = new StringBuilder();
StringBuilder references = new StringBuilder();
YellowstonePathology.Business.Test.PDL122C3.PDL122C3Test pdl122C3Test = new PDL122C3.PDL122C3Test();
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTest ros1ByfishTest = new ROS1ByFISH.ROS1ByFISHTest();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafTest = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
YellowstonePathology.Business.Test.PDL1SP142.PDL1SP142Test pdl1SP142Test = new PDL1SP142.PDL1SP142Test();
YellowstonePathology.Business.PanelSet.Model.PanelSetALKRetired panelSetALKRetired = new PanelSet.Model.PanelSetALKRetired();
if (panelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true)
{
Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)panelSetOrderCollection.GetPanelSetOrder(egfrMutationAnalysisTest.PanelSetId);
interpretation.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.Interpretation);
references.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.ReportReferences);
method.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.Method);
this.m_EGFRMutationAnalysisResult = egfrMutationAnalysisTestOrder.Result;
this.m_EGFRMutationAnalysisComment = egfrMutationAnalysisTestOrder.Comment;
}
if (panelSetOrderCollection.Exists(alkTest.PanelSetId) == true)
{
Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkTestOrder = (ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)panelSetOrderCollection.GetPanelSetOrder(alkTest.PanelSetId);
references.AppendLine();
references.AppendLine("ALK: " + alkTestOrder.ReportReferences);
interpretation.AppendLine();
interpretation.AppendLine("ALK: " + alkTestOrder.Interpretation);
method.AppendLine();
method.AppendLine("ALK: " + alkTestOrder.Method);
this.m_ALKForNSCLCByFISHResult = alkTestOrder.Result;
}
else if (panelSetOrderCollection.Exists(panelSetALKRetired.PanelSetId) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately();
this.m_ALKForNSCLCByFISHResult = alkForNSCLCByFISHTestOrderReportedSeparately.Result;
}
if (panelSetOrderCollection.Exists(ros1ByfishTest.PanelSetId) == true)
{
Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (ROS1ByFISH.ROS1ByFISHTestOrder)panelSetOrderCollection.GetPanelSetOrder(ros1ByfishTest.PanelSetId);
interpretation.AppendLine();
interpretation.AppendLine("ROS1: " + ros1ByFISHTestOrder.Interpretation);
method.AppendLine();
method.AppendLine("ROS1: " + ros1ByFISHTestOrder.Method);
this.m_ROS1ByFISHResult = ros1ByFISHTestOrder.Result;
}
if (panelSetOrderCollection.Exists(pdl1SP142Test.PanelSetId) == true)
{
Test.PDL1SP142.PDL1SP142TestOrder pdl1SP142TestOrder = (PDL1SP142.PDL1SP142TestOrder)panelSetOrderCollection.GetPanelSetOrder(pdl1SP142Test.PanelSetId);
interpretation.AppendLine();
interpretation.AppendLine(pdl1SP142TestOrder.PanelSetName + ": " + pdl1SP142TestOrder.Interpretation);
method.AppendLine();
method.AppendLine(pdl1SP142TestOrder.PanelSetName + ": " + pdl1SP142TestOrder.Method);
this.m_PDL1SP142Result = pdl1SP142TestOrder.Result;
this.m_PDL1SP142StainPercent = pdl1SP142TestOrder.StainPercent;
}
if (panelSetOrderCollection.Exists(pdl122C3Test.PanelSetId) == true)
{
Test.PDL122C3.PDL122C3TestOrder pdl122C3TestOrder = (PDL122C3.PDL122C3TestOrder)panelSetOrderCollection.GetPanelSetOrder(pdl122C3Test.PanelSetId);
interpretation.AppendLine();
interpretation.AppendLine(pdl122C3TestOrder.PanelSetName + ": " + pdl122C3TestOrder.Interpretation);
method.AppendLine();
method.AppendLine(pdl122C3TestOrder.PanelSetName + ": " + pdl122C3TestOrder.Method);
this.m_PDL122C3Result = pdl122C3TestOrder.Result;
}
if (panelSetOrderCollection.Exists(brafTest.PanelSetId) == true)
{
Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder brafTestOrder = (BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder)panelSetOrderCollection.GetPanelSetOrder(brafTest.PanelSetId);
interpretation.AppendLine();
interpretation.AppendLine(brafTestOrder.PanelSetName + ": " + brafTestOrder.Interpretation);
method.AppendLine();
method.AppendLine(brafTestOrder.PanelSetName + ": " + brafTestOrder.Method);
this.m_BRAFMutationAnalysisResult = brafTestOrder.Result;
}
char[] lineFeedCharacters = { '\r', '\n' };
this.Interpretation = interpretation.ToString().TrimEnd(lineFeedCharacters);
this.Method = method.ToString().TrimEnd(lineFeedCharacters);
this.ReportReferences = references.ToString().TrimEnd(lineFeedCharacters);
this.NotifyPropertyChanged(string.Empty);
}
protected Rules.MethodResult HasFinalBRAFResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder, YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeEvaluation panelSetOrderLynchSyndromeEvaluation)
{
Rules.MethodResult result = new Rules.MethodResult();
result.Success = false;
YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTest brafV600EKTest = new YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTest();
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafMutationAnalysisTest = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
YellowstonePathology.Business.Test.RASRAFPanel.RASRAFPanelTest rasRAFPanelTest = new YellowstonePathology.Business.Test.RASRAFPanel.RASRAFPanelTest();
if (accessionOrder.PanelSetOrderCollection.Exists(brafV600EKTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, true) == true)
{
YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTestOrder panelSetOrderBraf = (YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(brafV600EKTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, true);
if (panelSetOrderBraf.Final == true)
{
result.Success = true;
result.Message = panelSetOrderBraf.GetSummaryResult();
}
else
{
result.Success = false;
result.Message = "Unable to set results as the " + brafV600EKTest.PanelSetName + " is not final.";
}
}
else if (accessionOrder.PanelSetOrderCollection.Exists(brafMutationAnalysisTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, true) == true)
{
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder brafMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(brafMutationAnalysisTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, true);
if (brafMutationAnalysisTestOrder.Final == true)
{
result.Success = true;
result.Message = brafMutationAnalysisTestOrder.GetSummaryResult();
}
else
{
result.Success = false;
result.Message = "Unable to set results as the " + brafMutationAnalysisTest.PanelSetName + " is not final.";
}
}
else if (accessionOrder.PanelSetOrderCollection.Exists(rasRAFPanelTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, true) == true)
{
YellowstonePathology.Business.Test.RASRAFPanel.RASRAFPanelTestOrder panelSetOrderRASRAF = (YellowstonePathology.Business.Test.RASRAFPanel.RASRAFPanelTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(rasRAFPanelTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, true);
if (panelSetOrderRASRAF.Final == true)
{
result.Success = true;
result.Message = panelSetOrderRASRAF.GetBrafSummaryResult();
}
else
{
result.Success = false;
result.Message = "Unable to set results as the " + rasRAFPanelTest.PanelSetName + " is not final.";
}
}
if (result.Success == false && string.IsNullOrEmpty(result.Message) == true)
{
result.Message = "Unable to set results as a BRAF has not been ordered.";
}
return(result);
}
public override void Render()
{
Business.Test.LynchSyndrome.LynchSyndromeEvaluationTest lynchSyndromeEvaluationTest = new LynchSyndromeEvaluationTest();
int molecularTestCount = 0;
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\LynchSyndromeEvaluation.2.xml";
this.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
YellowstonePathology.Business.Amendment.Model.AmendmentCollection amendmentCollection = this.m_AccessionOrder.AmendmentCollection.GetAmendmentsForReport(m_PanelSetOrder.ReportNo);
this.SetAmendments(amendmentCollection);
YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeEvaluation panelSetOrderLynchSyndromeEvaluation = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeEvaluation) this.m_PanelSetOrder;
base.ReplaceText("report_result", panelSetOrderLynchSyndromeEvaluation.Result);
base.ReplaceText("report_interpretation", panelSetOrderLynchSyndromeEvaluation.Interpretation);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrderLynchSyndromeEvaluation.OrderedOn, panelSetOrderLynchSyndromeEvaluation.OrderedOnId);
this.ReplaceText("specimen_description", specimenOrder.Description);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC panelSetOrderLynchSyndromeIHC = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(102, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, true);
if (panelSetOrderLynchSyndromeIHC != null)
{
base.ReplaceText("mlh1_result", panelSetOrderLynchSyndromeIHC.MLH1Result);
base.ReplaceText("msh2_result", panelSetOrderLynchSyndromeIHC.MSH2Result);
base.ReplaceText("msh6_result", panelSetOrderLynchSyndromeIHC.MSH6Result);
base.ReplaceText("pms2_result", panelSetOrderLynchSyndromeIHC.PMS2Result);
}
if (panelSetOrderLynchSyndromeEvaluation.ReflexToBRAFMeth == true)
{
molecularTestCount += 1;
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTest brafMutationAnlaysis = new BRAFMutationAnalysis.BRAFMutationAnalysisTest();
YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTest brafV600EKTest = new YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTest();
YellowstonePathology.Business.Test.RASRAFPanel.RASRAFPanelTest rasRAFPanelTest = new YellowstonePathology.Business.Test.RASRAFPanel.RASRAFPanelTest();
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(brafV600EKTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, false) == true)
{
YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTestOrder panelSetOrderBraf = (YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(brafV600EKTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, false);
base.ReplaceText("braf_result", panelSetOrderBraf.Result);
base.ReplaceText("molecular_analysis_header", "Molecular Analysis");
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(brafMutationAnlaysis.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, false) == true)
{
YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder panelSetOrderBraf = (YellowstonePathology.Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(brafMutationAnlaysis.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, false);
base.ReplaceText("braf_result", panelSetOrderBraf.Result);
base.ReplaceText("molecular_analysis_header", "Molecular Analysis");
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(rasRAFPanelTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, false) == true)
{
YellowstonePathology.Business.Test.RASRAFPanel.RASRAFPanelTestOrder panelSetOrderRASRAF = (YellowstonePathology.Business.Test.RASRAFPanel.RASRAFPanelTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(rasRAFPanelTest.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, false);
base.ReplaceText("braf_result", panelSetOrderRASRAF.BRAFResult);
base.ReplaceText("molecular_analysis_header", "Molecular Analysis");
}
}
else
{
this.DeleteRow("braf_result");
}
YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest panelSetMLH1 = new YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest();
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(panelSetMLH1.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, true) == true)
{
molecularTestCount += 1;
YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderMLH1MethylationAnalysis panelSetOrderMLH1MethylationAnalysis = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderMLH1MethylationAnalysis) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetMLH1.PanelSetId, panelSetOrderLynchSyndromeEvaluation.OrderedOnId, true);
base.ReplaceText("mlh1methylation_result", panelSetOrderMLH1MethylationAnalysis.Result);
base.ReplaceText("molecular_analysis_header", "Molecular Analysis");
}
else
{
this.DeleteRow("mlh1methylation_result");
}
if (molecularTestCount == 0)
{
this.DeleteRow("molecular_analysis_header");
}
base.ReplaceText("report_references", panelSetOrderLynchSyndromeEvaluation.ReportReferences);
base.ReplaceText("report_method", panelSetOrderLynchSyndromeEvaluation.Method);
base.ReplaceText("pathologist_signature", panelSetOrderLynchSyndromeEvaluation.Signature);
base.ReplaceText("summary_location_performed", this.m_AccessionOrder.PanelSetOrderCollection.GetLocationPerformedSummary(lynchSyndromeEvaluationTest.PanelSetIDList));
this.SaveReport();
}
