/// <summary>
/// Calls the corresponding Submit function, but waits for the cluster to Finish, Fail, or be Canceled. If the final state is
/// Finished, returns silently. Otherwise, it throws and Exception. For a description of the other parameters, see Submit().
/// *** NOTE: ONLY WORKS WITH V2 CLUSTERS. ****
/// </summary>
public static ClusterSubmitterArgs SubmitAndWait(ArgumentCollection argumentCollection, int maxSubmitAfterTasksFail = 0)
{
if (argumentCollection.PeekOptional <string>("cluster", "help").Equals("help", StringComparison.CurrentCultureIgnoreCase))
{
Console.WriteLine("");
Console.WriteLine(HelpMessage);
return(null);
}
ClusterSubmitterArgs clusterArgs = new ClusterSubmitterArgs(argumentCollection);
SubmitAndWait(clusterArgs, argumentCollection, maxSubmitAfterTasksFail);
return(clusterArgs);
}
/// <summary>
/// Submits the ArgumentCollection to the cluster, telling the cluster to run whichever exe is currently running using a new set of args that divids the work up in to tasks.
/// IMPORTANT: For this to work, the calling exe needs to except two OPTIONAL args:
/// 1) -TaskCount n which tells the exe how many pieces to divide the work in to
/// 2) -Tasks i which tells the exe which piece that instance is in change of. Submit() will create TaskCount instances of the exe and do a parameter sweek on Tasks
/// For the complete list of optional and required args, see the HelpString.
/// </summary>
/// <param name="argumentCollection">The set of args, including the args for the exe and the args for the cluster submission, all of which are encoded as optional args (though some are required)
/// check to see if this job should actually be submitted (if so, return true, otherwise, false). This is useful to see if the results are already computed and if a completedRows
/// file should be made into a skipFile automatically. See PhyloDMain.cs for an example. Note that the out parameter is the ArgumentCollection that will actually be used to run the jobs.
/// This is so the function can add in a new SkipFile parameter if needed. Also, be careful: often times checking to see if you need a skipFile requires reading arguments from
/// the input args, which will modify that object. Your first step should be to Clone args and asign the result to argsToUseWithPossiblyUpdatedSkipFile.</param>
public static ClusterSubmitterArgs Submit(ArgumentCollection argumentCollection)
{
if (argumentCollection.PeekOptional <string>("cluster", "help").Equals("help", StringComparison.CurrentCultureIgnoreCase))
{
Console.WriteLine("");
Console.WriteLine(ArgumentCollection.CreateHelpMessage(typeof(ClusterSubmitterArgs), includeDateStamp: false));
return(null);
}
ClusterSubmitterArgs clusterArgs = new ClusterSubmitterArgs(argumentCollection);
Submit(clusterArgs, argumentCollection);
return(clusterArgs);
}