/*!
\brief This function load all the products wich are in <Products> fields and store them in an ActiveTransportProprieties.
\param node The XmlNode corresponding to <Products> </Products>.
\param AT The ActiveTransportProprieties where to store the products
\return Return true always (not really usefull)
*/
private bool loadActiveTransportReactionProducts(XmlNode node, ActiveTransportProprieties AT)
{
AT.products = new LinkedList<Product>();
foreach (XmlNode attr in node)
{
if (attr.Name == "name")
{
if (String.IsNullOrEmpty(attr.InnerText))
Debug.Log("Warning : Empty name field in ActiveTransport Reaction definition");
Product prod = new Product();
prod.setName(node.InnerText);
AT.products.AddLast(prod);
}
}
return true;
}
/*!
\brief Load all the attributes of an ActiveTransportProprieties.
\return The ActiveTransportProprieties object corresponding to the reaction describe in the node.
\param node The XmlNode corresponding to the <ATProp> </ATProp> node.
*/
private ActiveTransportProprieties loadActiveTransportProprieties(XmlNode node)
{
ActiveTransportProprieties prop = new ActiveTransportProprieties();
foreach (XmlNode attr in node)
{
switch (attr.Name)
{
case "name":
prop.name = checkActiveTransportString(attr.InnerText);
break;
case "substrate":
prop.substrate = checkActiveTransportString(attr.InnerText);
break;
case "enzyme":
prop.enzyme = checkActiveTransportString(attr.InnerText);
break;
case "Kcat":
prop.Kcat = checkActiveTransportFloat(attr.InnerText);
break;
case "effector":
prop.effector = checkActiveTransportString(attr.InnerText);
break;
case "alpha":
prop.alpha = checkActiveTransportFloat(attr.InnerText);
break;
case "beta":
prop.beta = checkActiveTransportFloat(attr.InnerText);
break;
case "Km":
prop.Km = checkActiveTransportFloat(attr.InnerText);
break;
case "Ki":
prop.Ki = checkActiveTransportFloat(attr.InnerText);
break;
case "MediumSrc":
prop.srcMediumId = checkActiveTransportInt(attr.InnerText);
break;
case "MediumDst":
prop.dstMediumId = checkActiveTransportInt(attr.InnerText);
break;
case "Products":
loadActiveTransportReactionProducts(attr, prop);
break;
}
}
return prop;
}
