Пример #1
0
        public void SetData(WorkspaceData data, WorkspaceData savedData)
        {
            if (Equals(Data, data) && Equals(SavedData, savedData))
            {
                return;
            }
            var workspaceChange = new WorkspaceChangeArgs(Data, SavedData);

            _data = data;
            _savedWorkspaceData = savedData;
            _tracerDefList      = null;
            RetentionTimeAlignments.SetData(Data);
            Settings.Update(workspaceChange);
            Modifications.Update(workspaceChange);
            TracerDefs.Update(workspaceChange);
            Peptides.Update(workspaceChange);
            MsDataFiles.Update(workspaceChange);
            PeptideAnalyses.Update(workspaceChange);
            var changeHandlers = Change;

            if (null != changeHandlers)
            {
                changeHandlers(this, workspaceChange);
            }
        }
Пример #2
0
        public void Save(LongOperationBroker longOperationBroker)
        {
            longOperationBroker.UpdateStatusMessage("Synchronizing with database changes");
            int reconcileAttempt = 1;

            while (true)
            {
                var dirtyPeptideAnalyses = PeptideAnalyses.ListDirty()
                                           .ToDictionary(pa => pa.Id, pa => pa.ChromatogramsWereLoaded);
                if (DatabasePoller.TryLoadAndMergeChanges(dirtyPeptideAnalyses))
                {
                    break;
                }
                reconcileAttempt++;
                longOperationBroker.UpdateStatusMessage("Synchronizing with database changes attempt #" + reconcileAttempt);
            }
            using (var session = OpenWriteSession())
            {
                session.BeginTransaction();
                UpdateWorkspaceVersion(longOperationBroker, session, SavedWorkspaceChange);
                bool workspaceChanged = false;
                var  dbWorkspace      = LoadDbWorkspace(session);
                longOperationBroker.UpdateStatusMessage("Saving tracer definitions");
                workspaceChanged = TracerDefs.Save(session, dbWorkspace) || workspaceChanged;
                longOperationBroker.UpdateStatusMessage("Saving modifications");
                workspaceChanged = Modifications.Save(session, dbWorkspace) || workspaceChanged;
                longOperationBroker.UpdateStatusMessage("Saving settings");
                workspaceChanged = Settings.Save(session, dbWorkspace) || workspaceChanged;
                longOperationBroker.UpdateStatusMessage("Saving data files");
                foreach (var msDataFile in MsDataFiles.ListDirty())
                {
                    msDataFile.Save(session);
                }
                longOperationBroker.UpdateStatusMessage("Saving peptides");
                foreach (var peptide in Peptides.ListDirty())
                {
                    peptide.Save(session);
                }
                longOperationBroker.UpdateStatusMessage("Saving peptide analyses");
                foreach (var peptideAnalysis in PeptideAnalyses.ListDirty())
                {
                    if (longOperationBroker.WasCancelled)
                    {
                        return;
                    }
                    peptideAnalysis.Save(session);
                }
                if (workspaceChanged)
                {
                    session.Save(new DbChangeLog(this));
                }
                longOperationBroker.SetIsCancelleable(false);
                session.Transaction.Commit();
            }
        }
Пример #3
0
 private Workspace()
 {
     _data                   = _savedWorkspaceData = new WorkspaceData();
     Modifications           = new Modifications(this);
     Settings                = new WorkspaceSettings(this);
     TracerDefs              = new TracerDefs(this);
     PeptideAnalyses         = new PeptideAnalyses(this);
     Peptides                = new Peptides(this);
     MsDataFiles             = new MsDataFiles(this);
     RetentionTimeAlignments = new RetentionTimeAlignments(Data);
 }
Пример #4
0
        public void Merge(WorkspaceData newData)
        {
            var newSavedData = newData;

            newData = Settings.Merge(newData);
            newData = Modifications.Merge(newData);
            newData = TracerDefs.Merge(newData);
            newData = Peptides.Merge(newData);
            newData = MsDataFiles.Merge(newData);
            newData = PeptideAnalyses.Merge(newData);
            SetData(newData, newSavedData);
        }