private static void ValidateLibraryDocs(SrmDocument docTarget, SrmDocument docActual, LibraryManager libraryManager)
{
var docContainer = new TestDocumentContainer();
libraryManager.Register(docContainer);
try
{
AssertEx.IsDocumentState(docActual, 0, docTarget.PeptideGroupCount, docTarget.PeptideCount,
docTarget.PeptideTransitionGroupCount, docTarget.PeptideTransitionCount);
docActual = docActual.ChangeSettings(docActual.Settings.ConnectLibrarySpecs(FindLibrarySpec));
Assert.IsTrue(docContainer.SetDocument(docActual, null, true));
SrmDocument docLoaded = docContainer.Document;
AssertEx.DocumentCloned(docTarget, docLoaded);
// Assert.IsTrue(ArrayUtil.ReferencesEqual(docActual.Transitions.ToArray(), docLoaded.Transitions.ToArray()));
// Assert.IsTrue(ArrayUtil.ReferencesEqual(docActual.TransitionGroups.ToArray(), docLoaded.TransitionGroups.ToArray()));
// Assert.IsTrue(ArrayUtil.ReferencesEqual(docActual.Peptides.ToArray(), docLoaded.Peptides.ToArray()));
Assert.IsTrue(ArrayUtil.ReferencesEqual(docActual.Children, docLoaded.Children));
}
finally
{
libraryManager.Unregister(docContainer);
}
}
private static SrmDocument CreateLibraryDocument(SrmSettings settings, string textFasta, bool peptideList,
TestDocumentContainer docContainer, BackgroundLoader libraryManager, out int startRev)
{
startRev = 0;
SrmDocument document = new SrmDocument(SrmSettingsList.GetDefault0_6());
Assert.IsTrue(docContainer.SetDocument(document, null));
// Register after first set document
libraryManager.Register(docContainer);
// Add libraries
SrmDocument docLibraries = document.ChangeSettings(settings);
++startRev;
// Add some FASTA
IdentityPath path = IdentityPath.ROOT;
SrmDocument docFasta = docLibraries.ImportFasta(new StringReader(textFasta), peptideList, path, out path);
++startRev;
// Until libraries are loaded, only the sequences should appear
if (!peptideList)
AssertEx.IsDocumentState(docFasta, startRev, textFasta.Count(c => c == '>'), 0, 0);
// Run the library load
Assert.IsTrue(docContainer.SetDocument(docFasta, document, true));
++startRev;
// After library load completes peptides and transitions should have expected library info
SrmDocument docLoaded = docContainer.Document;
// Check expected library inforamation
foreach (var nodePeptide in docLoaded.Peptides)
Assert.IsNull(nodePeptide.Rank);
foreach (var nodeTran in docLoaded.PeptideTransitions)
{
Assert.IsTrue(nodeTran.HasLibInfo);
Assert.IsTrue(nodeTran.LibInfo.Rank <= 3);
}
return docLoaded;
}