public int CompareTo(object obj)
{
if (null == obj)
{
return(1);
}
FoldChangeResult that = (FoldChangeResult)obj;
var thisTuple = new Tuple <double, double>(FoldChange, MinFoldChange);
var thatTuple = new Tuple <double, double>(that.FoldChange, that.MinFoldChange);
return(((IComparable)thisTuple).CompareTo(thatTuple));
}
public bool Matches(SrmDocument document, Protein protein, Databinding.Entities.Peptide peptide, FoldChangeResult foldChangeResult, CutoffSettings cutoffSettings)
{
foreach (var match in matchOptions)
{
switch (match)
{
case MatchOption.ProteinName:
case MatchOption.ProteinAccession:
case MatchOption.ProteinPreferredName:
case MatchOption.ProteinGene:
case MatchOption.PeptideSequence:
case MatchOption.PeptideModifiedSequence:
case MatchOption.MoleculeGroupName:
case MatchOption.MoleculeName:
case MatchOption.CAS:
case MatchOption.HMDB:
case MatchOption.InChiKey:
{
var matchString = GetMatchString(document, protein, peptide);
if (matchString == null || !Regex.IsMatch(matchString, RegExpr))
{
return(false);
}
break;
}
case MatchOption.BelowLeftCutoff:
{
if (!cutoffSettings.FoldChangeCutoffValid || foldChangeResult.Log2FoldChange >= -cutoffSettings.Log2FoldChangeCutoff)
{
return(false);
}
break;
}
case MatchOption.AboveRightCutoff:
{
if (!cutoffSettings.FoldChangeCutoffValid || foldChangeResult.Log2FoldChange <= cutoffSettings.Log2FoldChangeCutoff)
{
return(false);
}
break;
}
case MatchOption.BelowPValueCutoff:
{
if (!cutoffSettings.PValueCutoffValid || foldChangeResult.AdjustedPValue <= Math.Pow(10, -cutoffSettings.PValueCutoff))
{
return(false);
}
break;
}
case MatchOption.AbovePValueCutoff:
{
if (!cutoffSettings.PValueCutoffValid || foldChangeResult.AdjustedPValue >= Math.Pow(10, -cutoffSettings.PValueCutoff))
{
return(false);
}
break;
}
}
}
return(true);
}
public FoldChangeRow(Protein protein, Model.Databinding.Entities.Peptide peptide, IsotopeLabelType labelType,
int? msLevel, GroupIdentifier group, int replicateCount, FoldChangeResult foldChangeResult)
{
Protein = protein;
Peptide = peptide;
IsotopeLabelType = labelType;
MsLevel = msLevel;
ReplicateCount = replicateCount;
FoldChangeResult = foldChangeResult;
Group = group;
}
