public static TransitionGroupTreeNode CreateInstance(SequenceTree tree, DocNode nodeDoc)
{
Debug.Assert(nodeDoc is TransitionGroupDocNode);
var nodeTree = new TransitionGroupTreeNode(tree, (TransitionGroupDocNode)nodeDoc);
if (tree.ExpandPrecursors)
{
nodeTree.Expand();
}
return(nodeTree);
}
public static Size RenderTip(PeptideDocNode nodePep,
TransitionDocNode nodeTranSelected,
SrmSettings settings,
Graphics g,
Size sizeMax,
bool draw)
{
var table = new TableDesc();
using (RenderTools rt = new RenderTools())
{
Peptide peptide = nodePep.Peptide;
SizeF size;
if (peptide.IsCustomMolecule)
{
table.AddDetailRow(Resources.TransitionGroupTreeNode_RenderTip_Molecule, nodePep.CustomMolecule.Name, rt);
table.AddDetailRow(Resources.TransitionTreeNode_RenderTip_Formula, nodePep.CustomMolecule.Formula, rt);
table.AddDetailRow(Resources.PeptideTreeNode_RenderTip_Neutral_Mass,
nodePep.CustomMolecule.GetMass(settings.TransitionSettings.Prediction.PrecursorMassType).ToString(LocalizationHelper.CurrentCulture), rt);
foreach (var id in nodePep.CustomMolecule.AccessionNumbers.AccessionNumbers)
{
table.AddDetailRow(id.Key, id.Value, rt); // Show InChiKey etc as available
}
size = table.CalcDimensions(g);
table.Draw(g);
return(new Size((int)Math.Round(size.Width + 2), (int)Math.Round(size.Height + 2)));
}
if (peptide.IsDecoy)
{
string sourceText = nodePep.SourceTextId
.Replace(@".0]", @"]")
.Replace(@".", LocalizationHelper.CurrentCulture.NumberFormat.NumberDecimalSeparator);
table.AddDetailRow(Resources.PeptideTreeNode_RenderTip_Source, sourceText, rt);
}
if (nodePep.Children.Count > 1)
{
foreach (var typedModSequence in GetTypedModifiedSequences(nodePep, settings))
{
table.AddDetailRow(typedModSequence.Key.Title, typedModSequence.Value, rt);
}
}
if (peptide.Begin.HasValue)
{
// Add a spacing row, if anything was added
if (table.Count > 0)
{
table.AddDetailRow(@" ", @" ", rt);
}
table.AddDetailRow(Resources.PeptideTreeNode_RenderTip_Previous, peptide.PrevAA.ToString(CultureInfo.InvariantCulture), rt);
table.AddDetailRow(Resources.PeptideTreeNode_RenderTip_First, peptide.Begin.Value.ToString(LocalizationHelper.CurrentCulture), rt);
table.AddDetailRow(Resources.PeptideTreeNode_RenderTip_Last, ((peptide.End ?? 1) - 1).ToString(LocalizationHelper.CurrentCulture), rt);
table.AddDetailRow(Resources.PeptideTreeNode_RenderTip_Next, peptide.NextAA.ToString(CultureInfo.InvariantCulture), rt);
}
if (nodePep.Rank.HasValue)
{
table.AddDetailRow(Resources.PeptideTreeNode_RenderTip_Rank, nodePep.Rank.Value.ToString(LocalizationHelper.CurrentCulture), rt);
}
size = table.CalcDimensions(g);
if (draw)
{
table.Draw(g);
}
// Render group tip, if there is only one, and this node is collapsed
if (nodePep.Children.Count == 1)
{
var nodeGroup = (TransitionGroupDocNode)nodePep.Children[0];
if (size.Height > 0)
{
size.Height += TableDesc.TABLE_SPACING;
}
if (draw)
{
g.TranslateTransform(0, size.Height);
}
Size sizeMaxGroup = new Size(sizeMax.Width, sizeMax.Height - (int)size.Height);
SizeF sizeGroup = TransitionGroupTreeNode.RenderTip(nodePep, nodeGroup,
nodeTranSelected, settings, g, sizeMaxGroup, draw);
if (draw)
{
g.TranslateTransform(0, -size.Height);
}
size.Width = Math.Max(size.Width, sizeGroup.Width);
size.Height += sizeGroup.Height;
}
return(new Size((int)Math.Round(size.Width + 2), (int)Math.Round(size.Height + 2)));
}
}
public Size RenderTip(Graphics g, Size sizeMax, bool draw)
{
return(TransitionGroupTreeNode.RenderTip(_nodePep, _nodeGroup, null,
_settings, g, sizeMax, draw));
}
public override Image GetPickPeakImage(DocNode child)
{
return(TransitionGroupTreeNode.GetPeakImage((TransitionGroupDocNode)child, DocNode, SequenceTree));
}
public override string GetPickLabel(DocNode child)
{
return(TransitionGroupTreeNode.DisplayText((TransitionGroupDocNode)child,
SequenceTree.GetDisplaySettings((PeptideDocNode)Model)));
}
public static TransitionGroupTreeNode CreateInstance(SequenceTree tree, DocNode nodeDoc)
{
Debug.Assert(nodeDoc is TransitionGroupDocNode);
var nodeTree = new TransitionGroupTreeNode(tree, (TransitionGroupDocNode) nodeDoc);
if (tree.ExpandPrecursors)
nodeTree.Expand();
return nodeTree;
}