ModelCreator(ModelCreator orig) : this(libsbmlPINVOKE.new_ModelCreator__SWIG_2(ModelCreator.getCPtr(orig)), true) { if (libsbmlPINVOKE.SWIGPendingException.Pending) { throw libsbmlPINVOKE.SWIGPendingException.Retrieve(); } }
public ModelCreator get(uint n) { global::System.IntPtr cPtr = libsbmlPINVOKE.ModelCreatorList_get(swigCPtr, n); ModelCreator ret = (cPtr == global::System.IntPtr.Zero) ? null : new ModelCreator(cPtr, false); return(ret); }
ModelCreator clone() { IntPtr cPtr = libsbmlPINVOKE.ModelCreator_clone(swigCPtr); ModelCreator ret = (cPtr == IntPtr.Zero) ? null : new ModelCreator(cPtr, true); return(ret); }
public ModelCreator remove(uint n) { IntPtr cPtr = libsbmlPINVOKE.ModelCreatorList_remove(swigCPtr, n); ModelCreator ret = (cPtr == IntPtr.Zero) ? null : new ModelCreator(cPtr, false); return(ret); }
ModelCreator getCreator(long n) { IntPtr cPtr = libsbmlPINVOKE.ModelHistory_getCreator(swigCPtr, n); ModelCreator ret = (cPtr == IntPtr.Zero) ? null : new ModelCreator(cPtr, false); return(ret); }
public void test_ModelHistory_addCreator2() { ModelHistory mh = new ModelHistory(); ModelCreator mc = new ModelCreator(); mc.setGivenName( "Sarah"); int i = mh.addCreator(mc); assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ); assertTrue( mh.getNumCreators() == 0 ); mc = null; mh = null; }
public static int Main(string[] args) { SBMLDocument d; int errors; if (args.Length != 2) { Console.Write(Environment.NewLine + " usage: addModelHistory <input-filename> <output-filename>" + Environment.NewLine + Environment.NewLine); return 2; } d = libsbml.readSBML(args[0]); errors = (int)d.getNumErrors(); if (errors > 0) { Console.Write("Read Error(s):" + Environment.NewLine); d.printErrors(); Console.Write("Correct the above and re-run." + Environment.NewLine); } else { ModelHistory h = new ModelHistory(); ModelCreator c = new ModelCreator(); c.setFamilyName("Keating"); c.setGivenName("Sarah"); c.setEmail("*****@*****.**"); c.setOrganization("University of Hertfordshire"); long status = h.addCreator(c); printStatus("Status for addCreator: ", status); Date date = new Date("1999-11-13T06:54:32"); Date date2 = new Date("2007-11-30T06:54:00-02:00"); status = h.setCreatedDate(date); printStatus("Set created date: ", status); status = h.setModifiedDate(date2); printStatus("Set modified date: ", status); status = d.getModel().setModelHistory(h); printStatus("Set model history: ", status); libsbml.writeSBML(d, args[1]); } return errors; }
internal static HandleRef getCPtrAndDisown(ModelCreator obj) { HandleRef ptr = new HandleRef(null, IntPtr.Zero); if (obj != null) { ptr = obj.swigCPtr; obj.swigCMemOwn = false; } return(ptr); }
public void test_ModelHistory_addCreator1() { ModelHistory mh = new ModelHistory(); ModelCreator mc = new ModelCreator(); mc.setFamilyName( "Keating"); mc.setGivenName( "Sarah"); int i = mh.addCreator(mc); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( mh.getNumCreators() == 1 ); mc = null; mh = null; }
public void test_ModelCreator_setGivenName() { ModelCreator mc = new ModelCreator(); assertTrue( mc != null ); int i = mc.setGivenName( "Sarah"); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( mc.isSetGivenName() == true ); assertTrue(( "Sarah" == mc.getGivenName() )); i = mc.setGivenName( ""); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( mc.isSetGivenName() == false ); i = mc.setGivenName( "Sarah"); assertTrue( mc.isSetGivenName() == true ); i = mc.unsetGivenName(); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( mc.isSetGivenName() == false ); mc = null; }
public void test_ModelHistory_copyConstructor() { ModelHistory mh = new ModelHistory(); ModelCreator mc = new ModelCreator(); mc.setFamilyName("Keating"); mc.setGivenName("Sarah"); mc.setEmail("*****@*****.**"); mh.addCreator(mc); mc = null; Date date = new Date(2005,12,30,12,15,45,1,2,0); mh.setCreatedDate(date); date = null; assertTrue( mh.getCreatedDate().getMonth() == 12 ); assertTrue( mh.getCreatedDate().getSecond() == 45 ); assertTrue( ((ModelCreator) mh.getCreator(0)).getFamilyName() == "Keating" ); ModelHistory mh2 = new ModelHistory(mh); assertTrue( mh2.getCreatedDate().getMonth() == 12 ); assertTrue( mh2.getCreatedDate().getSecond() == 45 ); assertTrue( ((ModelCreator) mh2.getCreator(0)).getFamilyName() == "Keating" ); mh2 = null; mh = null; }
public void test_L3_Species_ModelHistory() { (S).setMetaId("_3"); ModelHistory history = new ModelHistory(); int i = (S).setModelHistory(history); assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ); assertEquals( false, (S).isSetModelHistory() ); ModelCreator mc = new ModelCreator(); Date date = new Date(2005,12,30,12,15,45,1,2,0); mc.setFamilyName( "Keating"); mc.setGivenName( "Sarah"); mc.setEmail( "*****@*****.**"); mc.setOrganisation( "UH"); history.addCreator(mc); history.setCreatedDate(date); history.setModifiedDate(date); i = (S).setModelHistory(history); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertEquals( true, (S).isSetModelHistory() ); i = (S).unsetModelHistory(); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertEquals( false, (S).isSetModelHistory() ); assertTrue( (S).getModelHistory() == null ); history = null; }
public void test_ModelHistory_addCreator() { ModelCreator newMC; ModelHistory history = new ModelHistory(); assertTrue( history.getNumCreators() == 0 ); assertTrue( history != null ); ModelCreator mc = new ModelCreator(); assertTrue( mc != null ); mc.setFamilyName( "Keating"); mc.setGivenName( "Sarah"); mc.setEmail( "*****@*****.**"); mc.setOrganisation( "UH"); history.addCreator(mc); assertTrue( history.getNumCreators() == 1 ); mc = null; newMC = history.getListCreators().get(0); assertTrue( newMC != null ); assertTrue(( "Keating" == newMC.getFamilyName() )); assertTrue(( "Sarah" == newMC.getGivenName() )); assertTrue(( "*****@*****.**" == newMC.getEmail() )); assertTrue(( "UH" == newMC.getOrganisation() )); history = null; }
public void prepend(ModelCreator item) { libsbmlPINVOKE.ModelCreatorList_prepend(swigCPtr, ModelCreator.getCPtr(item)); }
internal static HandleRef getCPtrAndDisown(ModelCreator obj) { HandleRef ptr = new HandleRef(null, IntPtr.Zero); if (obj != null) { ptr = obj.swigCPtr; obj.swigCMemOwn = false; } return ptr; }
public void test_SBase_setModelHistory_Model() { S.setMetaId("_001"); ModelHistory history = new ModelHistory(); ModelCreator mc = new ModelCreator(); Date date = new Date(2005,12,30,12,15,45,1,2,0); mc.setFamilyName( "Keating"); mc.setGivenName( "Sarah"); mc.setEmail( "*****@*****.**"); mc.setOrganisation( "UH"); history.addCreator(mc); history.setCreatedDate(date); history.setModifiedDate(date); int i = S.setModelHistory(history); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); history = null; }
public void test_RDFAnnotation2_modelWithHistoryAndCVTerms() { ModelHistory h = new ModelHistory(); ModelCreator c = new ModelCreator(); c.setFamilyName("Keating"); c.setGivenName("Sarah"); h.addCreator(c); Date d = new Date(2008,11,17,18,37,0,0,0,0); h.setCreatedDate(d); h.setModifiedDate(d); m2.unsetModelHistory(); m2.setModelHistory(h); CVTerm cv = new CVTerm(); cv.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER); cv.setBiologicalQualifierType(libsbml.BQB_IS_VERSION_OF); cv.addResource("http://www.geneontology.org/#GO:0005892"); m2.addCVTerm(cv); XMLNode ann = RDFAnnotationParser.parseModelHistory(m2); string expected = "<annotation>\n" + " <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" + " <rdf:Description rdf:about=\"#_000001\">\n" + " <dc:creator rdf:parseType=\"Resource\">\n" + " <rdf:Bag>\n" + " <rdf:li rdf:parseType=\"Resource\">\n" + " <vCard:N rdf:parseType=\"Resource\">\n" + " <vCard:Family>Keating</vCard:Family>\n" + " <vCard:Given>Sarah</vCard:Given>\n" + " </vCard:N>\n" + " </rdf:li>\n" + " </rdf:Bag>\n" + " </dc:creator>\n" + " <dcterms:created rdf:parseType=\"Resource\">\n" + " <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" + " </dcterms:created>\n" + " <dcterms:modified rdf:parseType=\"Resource\">\n" + " <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" + " </dcterms:modified>\n" + " <bqbiol:isVersionOf>\n" + " <rdf:Bag>\n" + " <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0005892\"/>\n" + " </rdf:Bag>\n" + " </bqbiol:isVersionOf>\n" + " </rdf:Description>\n" + " </rdf:RDF>\n" + "</annotation>"; if (ann != null); { assertEquals( true, equals(expected,ann.toXMLString()) ); } { } }
public void test_Model_setgetModelHistory() { M.setMetaId("_001"); ModelHistory history = new ModelHistory(); ModelCreator mc = new ModelCreator(); Date date = new Date(2005,12,30,12,15,45,1,2,0); mc.setFamilyName( "Keating"); mc.setGivenName( "Sarah"); mc.setEmail( "*****@*****.**"); mc.setOrganisation( "UH"); history.addCreator(mc); history.setCreatedDate(date); history.setModifiedDate(date); assertTrue( M.isSetModelHistory() == false ); M.setModelHistory(history); assertTrue( M.isSetModelHistory() == true ); ModelCreator newMC = history.getCreator(0); assertTrue( newMC != null ); assertTrue(( "Keating" == newMC.getFamilyName() )); assertTrue(( "Sarah" == newMC.getGivenName() )); assertTrue(( "*****@*****.**" == newMC.getEmail() )); assertTrue(( "UH" == newMC.getOrganisation() )); M.unsetModelHistory(); assertTrue( M.isSetModelHistory() == false ); history = null; mc = null; }
public void test_SBase_unsetAnnotationWithModelHistory() { ModelHistory h = new ModelHistory (); ModelCreator c = new ModelCreator (); Date dc; Date dm; string annt = "<annotation>\n" + " <test:test xmlns:test=\"http://test.org/test\">this is a test node</test:test>\n" + "</annotation>"; string annt_with_modelhistory = "<annotation>\n" + " <test:test xmlns:test=\"http://test.org/test\">this is a test node</test:test>\n" + " <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" " + "xmlns:dc=\"http://purl.org/dc/elements/1.1/\" " + "xmlns:dcterms=\"http://purl.org/dc/terms/\" " + "xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" " + "xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" " + "xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" + " <rdf:Description rdf:about=\"#_000001\">\n" + " <dc:creator>\n" + " <rdf:Bag>\n" + " <rdf:li rdf:parseType=\"Resource\">\n" + " <vCard:N rdf:parseType=\"Resource\">\n" + " <vCard:Family>Keating</vCard:Family>\n" + " <vCard:Given>Sarah</vCard:Given>\n" + " </vCard:N>\n" + " <vCard:EMAIL>[email protected]</vCard:EMAIL>\n" + " </rdf:li>\n" + " </rdf:Bag>\n" + " </dc:creator>\n" + " <dcterms:created rdf:parseType=\"Resource\">\n" + " <dcterms:W3CDTF>2005-12-29T12:15:45+02:00</dcterms:W3CDTF>\n" + " </dcterms:created>\n" + " <dcterms:modified rdf:parseType=\"Resource\">\n" + " <dcterms:W3CDTF>2005-12-30T12:15:45+02:00</dcterms:W3CDTF>\n" + " </dcterms:modified>\n" + " </rdf:Description>\n" + " </rdf:RDF>\n" + "</annotation>"; S.setAnnotation (annt); assertTrue (S.isSetAnnotation () == true); assertTrue ((annt == S.getAnnotationString ())); S.unsetAnnotation (); assertTrue (S.isSetAnnotation () == false); assertTrue (S.getAnnotation () == null); S.setAnnotation (annt); S.setMetaId ("_000001"); c.setFamilyName ("Keating"); c.setGivenName ("Sarah"); c.setEmail ("*****@*****.**"); h.addCreator (c); dc = new Date (2005, 12, 29, 12, 15, 45, 1, 2, 0); h.setCreatedDate (dc); dm = new Date (2005, 12, 30, 12, 15, 45, 1, 2, 0); h.setModifiedDate (dm); S.setModelHistory (h); assertTrue (S.isSetAnnotation () == true); assertTrue ((annt_with_modelhistory == S.getAnnotationString ())); S.unsetAnnotation (); assertTrue (S.isSetAnnotation () == false); assertTrue (S.getAnnotation () == null); c = null; h = null; }
public void test_Validation_ModelHistory3() { ModelHistory mh = new ModelHistory(); assertTrue( mh != null ); assertEquals( false, (mh.hasRequiredAttributes()) ); Date date = new Date(2007,12,30,12,15,45,1,2,0); mh.setCreatedDate(date); assertEquals( false, (mh.hasRequiredAttributes()) ); mh.setModifiedDate(date); assertEquals( false, (mh.hasRequiredAttributes()) ); ModelCreator mc = new ModelCreator(); mc.setFamilyName("Keating"); mh.addCreator(mc); assertEquals( false, (mh.hasRequiredAttributes()) ); mh = null; }
public void test_Validation_ModelCreator() { ModelCreator mc = new ModelCreator(); assertTrue( mc != null ); assertEquals( false, (mc.hasRequiredAttributes()) ); mc.setEmail("k123"); assertEquals( false, (mc.hasRequiredAttributes()) ); mc.setFamilyName("Keating"); assertEquals( false, (mc.hasRequiredAttributes()) ); mc.setGivenName("Sarah"); assertEquals( true, mc.hasRequiredAttributes() ); mc = null; }
public void test_SBase_setModelHistoryL3() { SBase sb = new Species(3,1); sb.setMetaId("_s"); ModelHistory mh = new ModelHistory(); ModelCreator mc = new ModelCreator(); Date date = new Date(2005,12,30,12,15,45,1,2,0); mc.setFamilyName( "Keating"); mc.setGivenName( "Sarah"); mc.setEmail( "*****@*****.**"); mc.setOrganisation( "UH"); mh.addCreator(mc); mh.setCreatedDate(date); mh.setModifiedDate(date); int i = sb.setModelHistory(mh); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( sb.isSetModelHistory() == true ); mh = sb.getModelHistory(); assertTrue( mh != null ); sb.unsetModelHistory(); mh = sb.getModelHistory(); assertTrue( sb.isSetModelHistory() == false ); assertTrue( mh == null ); mh = null; }
int addCreator(ModelCreator mc) { int ret = libsbmlPINVOKE.ModelHistory_addCreator(swigCPtr, ModelCreator.getCPtr(mc)); return(ret); }
internal static HandleRef getCPtr(ModelCreator obj) { return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr; }
public void test_ModelCreator_setters() { ModelCreator mc = new ModelCreator(); assertTrue( mc != null ); assertTrue( mc.isSetFamilyName() == false ); assertTrue( mc.isSetGivenName() == false ); assertTrue( mc.isSetEmail() == false ); assertTrue( mc.isSetOrganisation() == false ); mc.setFamilyName( "Keating"); mc.setGivenName( "Sarah"); mc.setEmail( "*****@*****.**"); mc.setOrganisation( "UH"); assertTrue(( "Keating" == mc.getFamilyName() )); assertTrue(( "Sarah" == mc.getGivenName() )); assertTrue(( "*****@*****.**" == mc.getEmail() )); assertTrue(( "UH" == mc.getOrganisation() )); assertTrue( mc.isSetFamilyName() == true ); assertTrue( mc.isSetGivenName() == true ); assertTrue( mc.isSetEmail() == true ); assertTrue( mc.isSetOrganisation() == true ); mc.unsetFamilyName(); mc.unsetGivenName(); mc.unsetEmail(); mc.unsetOrganisation(); assertTrue(( "" == mc.getFamilyName() )); assertTrue(( "" == mc.getGivenName() )); assertTrue(( "" == mc.getEmail() )); assertTrue(( "" == mc.getOrganisation() )); assertTrue( mc.isSetFamilyName() == false ); assertTrue( mc.isSetGivenName() == false ); assertTrue( mc.isSetEmail() == false ); assertTrue( mc.isSetOrganisation() == false ); assertTrue( mc.isSetOrganization() == false ); mc.setOrganization( "UH"); assertTrue(( "UH" == mc.getOrganization() )); assertTrue( mc.isSetOrganization() == true ); mc.unsetOrganisation(); assertTrue(( "" == mc.getOrganization() )); assertTrue( mc.isSetOrganization() == false ); mc = null; }
/** * Copy constructor; creates a copy of the ModelCreator. * * @param orig the object to copy. */ public ModelCreator(ModelCreator orig) : this(libsbmlPINVOKE.new_ModelCreator__SWIG_2(ModelCreator.getCPtr(orig)), true) { if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve(); }
public void test_ModelCreator_assignmentOperator() { ModelCreator mc = new ModelCreator(); mc.setFamilyName("Keating"); mc.setEmail("*****@*****.**"); assertTrue( mc.getFamilyName() == "Keating" ); assertTrue( mc.getEmail() == "*****@*****.**" ); ModelCreator mc2 = new ModelCreator(); mc2 = mc; assertTrue( mc2.getFamilyName() == "Keating" ); assertTrue( mc2.getEmail() == "*****@*****.**" ); mc2 = null; mc = null; }
public void test_ModelCreator_setOrganization() { ModelCreator mc = new ModelCreator(); assertTrue( mc != null ); int i = mc.setOrganization( "Caltech"); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( mc.isSetOrganization() == true ); assertTrue(( "Caltech" == mc.getOrganization() )); i = mc.setOrganization( ""); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( mc.isSetOrganization() == false ); i = mc.setOrganization( "Caltech"); assertTrue( mc.isSetOrganization() == true ); i = mc.unsetOrganization(); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( mc.isSetOrganization() == false ); mc = null; }
public void test_ModelCreator_copyConstructor() { ModelCreator mc = new ModelCreator(); mc.setFamilyName("Keating"); mc.setEmail("*****@*****.**"); assertTrue( mc.getFamilyName() == "Keating" ); assertTrue( mc.getEmail() == "*****@*****.**" ); ModelCreator mc2 = new ModelCreator(mc); assertTrue( mc2.getFamilyName() == "Keating" ); assertTrue( mc2.getEmail() == "*****@*****.**" ); mc2 = null; mc = null; }
internal static HandleRef getCPtr(ModelCreator obj) { return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr); }
public void test_RDFAnnotation2_modelWithHistoryWithCharacterReference() { ModelHistory h = new ModelHistory(); ModelCreator c = new ModelCreator(); c.setFamilyName("Dräger"); c.setGivenName("Andreas"); h.addCreator(c); Date d = new Date(2005,2,2,14,56,11); h.setCreatedDate(d); h.addModifiedDate(d); m2.unsetModelHistory(); m2.setModelHistory(h); XMLNode ann = RDFAnnotationParser.parseModelHistory(m2); string expected = "<annotation>\n" + " <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" + " <rdf:Description rdf:about=\"#_000001\">\n" + " <dc:creator rdf:parseType=\"Resource\">\n" + " <rdf:Bag>\n" + " <rdf:li rdf:parseType=\"Resource\">\n" + " <vCard:N rdf:parseType=\"Resource\">\n" + " <vCard:Family>Dräger</vCard:Family>\n" + " <vCard:Given>Andreas</vCard:Given>\n" + " </vCard:N>\n" + " </rdf:li>\n" + " </rdf:Bag>\n" + " </dc:creator>\n" + " <dcterms:created rdf:parseType=\"Resource\">\n" + " <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" + " </dcterms:created>\n" + " <dcterms:modified rdf:parseType=\"Resource\">\n" + " <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" + " </dcterms:modified>\n" + " </rdf:Description>\n" + " </rdf:RDF>\n" + "</annotation>"; assertEquals( true, equals(expected,ann.toXMLString()) ); }
/** * Adds a copy of a ModelCreator object to the list of 'model creator' * values stored in this ModelHistory object. * * In the MIRIAM format for annotations, there can be multiple model * creators. The libSBML ModelHistory class supports this by storing a * list of 'model creator' values. * * @param mc the ModelCreator to add * * @return integer value indicating success/failure of the * function. @if clike The value is drawn from the * enumeration #OperationReturnValues_t. @endif The possible values * returned by this function are: * @li @link libsbmlcs#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink * @li @link libsbmlcs#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink * @li @link libsbmlcs#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink */ public int addCreator(ModelCreator mc) { int ret = libsbmlPINVOKE.ModelHistory_addCreator(swigCPtr, ModelCreator.getCPtr(mc)); return ret; }
public void test_ModelCreator_create() { ModelCreator mc = new ModelCreator(); assertTrue( mc != null ); mc = null; }