public static sitk.Image ReadImage(string fileName)
{
sitk.ImageFileReader imageFileReader = new sitk.ImageFileReader();
imageFileReader.SetFileName(fileName);
sitk.Image image = imageFileReader.Execute();
return(image);
}
/// <summary>
/// Reads an ITK image from file, specifying the output pixel type.
/// </summary>
/// <param name="file">filename</param>
/// <param name="outputType">output pixel type</param>
/// <returns>image</returns>
public static sitk.Image ReadITKImageFromFile(string file, sitk.PixelIDValueEnum outputType)
{
sitk.ImageFileReader reader = new sitk.ImageFileReader();
reader.SetFileName(file);
reader.SetOutputPixelType(outputType);
return(reader.Execute());
}
/// <summary>
/// Reads an ITK image as a grayscale image.
/// </summary>
/// <param name="file">filename</param>
/// <param name="outputType">output datatype</param>
/// <param name="channel">channel to extract</param>
/// <returns>grayscale ITK image</returns>
public static sitk.Image ReadITKImageAsGrayscaleFromFile(string file, sitk.PixelIDValueEnum outputType, ColorChannel channel)
{
sitk.ImageFileReader reader = new sitk.ImageFileReader();
reader.SetFileName(file);
reader.SetOutputPixelType(outputType);
sitk.Image temp = reader.Execute();
sitk.Image result = null;
sitk.VectorIndexSelectionCastImageFilter rgbVector = new sitk.VectorIndexSelectionCastImageFilter();
switch (channel)
{
case ColorChannel.R: result = rgbVector.Execute(temp, 0, sitk.PixelIDValueEnum.sitkFloat32); break;
case ColorChannel.G: result = rgbVector.Execute(temp, 1, sitk.PixelIDValueEnum.sitkFloat32); break;
case ColorChannel.B: result = rgbVector.Execute(temp, 2, sitk.PixelIDValueEnum.sitkFloat32); break;
}
return(result);
}
public void ProcessRequest(HttpContext context)
{
// image ID, brightness and contrast value
Int32 iID, iBVal, iRot, iNoFiles;
Double dCVal;
String sPath;
// response type
context.Response.ContentType = "image/png";
// get and convert image parameters
if (context.Request.QueryString["NqC3ke"] != null) // ID
{
iID = Convert.ToInt32(context.Request.QueryString["NqC3ke"]);
}
else
{
throw new ArgumentException("No image id specified");
}
if (context.Request.QueryString["tXt9X3"] != null) // brightness
{
iBVal = Convert.ToInt32(context.Request.QueryString["tXt9X3"]);
}
else
{
throw new ArgumentException("No image brightness specified");
}
if (context.Request.QueryString["XwjRGm"] != null) // contrast
{
dCVal = Convert.ToDouble(context.Request.QueryString["XwjRGm"]);
}
else
{
throw new ArgumentException("No image contrast specified");
}
if (context.Request.QueryString["WkYTCe"] != null) // path
{
string obscuredPath = Convert.ToString(context.Request.QueryString["WkYTCe"]);
string unobscuredPath = "";
// old obfuscation
//for (int z = 0; z < obscuredPath.Length; z++)
//{
// int add = Constant.ceasarOdd;
// if (z % 2 == 0)
// {
// add = Constant.ceasarEven;
// }
// char c = (char)(obscuredPath[z] - add);
// unobscuredPath += c.ToString();
//}
// new obfuscation
string allowedChars = Constant.allowedCharacters;
for (int p = 0; p < obscuredPath.Length; p++)
{
for (int c = 0; c < allowedChars.Length; c++)
{
if (obscuredPath[p] == allowedChars[c])
{ // character is allowed
int add = Constant.ceasarOdd;
if (p % 2 == 0)
{
add = Constant.ceasarEven;
}
// remove unneccessary loops
add = add % (allowedChars.Length - 1);
int shift = c - add;
if (shift > (allowedChars.Length - 1))
{
shift = shift - (allowedChars.Length - 1);
}
else if ((shift) < 0)
{
shift = shift + (allowedChars.Length - 1);
}
char character = allowedChars[shift];
unobscuredPath += character.ToString();
break;
}
}
}
//Debug.Print("deobfuscation\t\t" + obscuredPath + " -> " + unobscuredPath);
sPath = unobscuredPath;
}
else
{
sPath = "";
}
if (context.Request.QueryString["Hsfke2"] != null) // rotate
{
iRot = Convert.ToInt32(context.Request.QueryString["Hsfke2"]);
}
else
{
iRot = 0;
}
if (context.Request.QueryString["yAR8st"] != null) // length
{
iNoFiles = Convert.ToInt32(context.Request.QueryString["yAR8st"]);
}
else
{
iNoFiles = 1;
}
// load image in byte array "bmVal"
//var bOld = false;
byte[] bmVal;
int iWidth;
int iHeight;
int iDepth;
itk.simple.Image itkImage;
if (!File.Exists(sPath))
{
// file was not found
}
try
{
itkImage = SimpleITK.ReadImage(sPath, PixelIDValueEnum.sitkFloat32);
}
catch (System.StackOverflowException)
{
itk.simple.ImageFileReader reader = new itk.simple.ImageFileReader();
reader.SetFileName(sPath);
itkImage = reader.Execute();
}
// get image direction
var iDir = itkImage.GetDirection();
// get spacing
VectorDouble dSpacing = itkImage.GetSpacing();
// get size and number of dimension
VectorUInt32 iSize = itkImage.GetSize();
int len = 1;
for (int iDim = 0; iDim < itkImage.GetDimension(); iDim++)
{
len *= (int)iSize[iDim];
}
iWidth = unchecked ((int)iSize[0]);
iHeight = unchecked ((int)iSize[1]);
iDepth = unchecked ((int)iSize[2]);
// convert mm->dpi
float fResolutionX = System.Convert.ToSingle(System.Convert.ToDouble(iWidth) * 25.4 / dSpacing[0]);
float fResolutionY = System.Convert.ToSingle(System.Convert.ToDouble(iHeight) * 25.4 / dSpacing[1]);
// 2D image size
int iLength = iWidth * iHeight;
// copy buffer to new array
IntPtr ipBuffer = itkImage.GetBufferAsFloat();
float[] fArray = new float[iLength];
// no negative indices
if (iID < 0)
{
iID = 0;
}
// multiple DICOM files
int iOffset = 0;
if (iNoFiles > 1)
{
if (iID >= (iNoFiles - 1))
{
iID = iNoFiles - 1;
}
iOffset = 0;
}
else if (iNoFiles == 1)
{
// one DICOM file
if (iDepth == 1)
{
iID = 1;
iOffset = 0;
}
// one 3D MHD file
else if (iDepth > 1)
{
if (iID > (iDepth - 1))
{
iID = iDepth - 1;
}
iOffset = (iID - 1) * iLength;
}
}
// new pointer to data (due to offset)
Marshal.Copy(new IntPtr(ipBuffer.ToInt64() + sizeof(float) * iOffset), fArray, 0, iLength);
// convert floating point to 8 bit integer values - range:0 - 255
float fMax = fArray.Max();
float fMin = fArray.Min();
bmVal = new byte[iWidth * iHeight];
for (int iI = 0; iI < iLength; iI++)
{
var tmp = (float)(((fArray[iI] - fMin) / (fMax - fMin) * 255) + iBVal) * (float)dCVal;
if (tmp > 255)
{
tmp = 255;
}
if (tmp < 0)
{
tmp = 0;
}
bmVal[iI] = (byte)tmp;
}
Bitmap bmOutput = fCreateBitmap(bmVal, new int[] { iWidth, iHeight }, new float[] { fResolutionX, fResolutionY });
// rotate image and flip in X direction due to different image orientation convention
// corrects *.mhd orientation
List <String> lsExtensions = new List <String> {
".mhd", ".MHD"
};
foreach (var ext in lsExtensions)
{
if (sPath.EndsWith(ext))
{ // *.mhd files have a different orientation (compared to *.ima)
bmOutput.RotateFlip(RotateFlipType.Rotate90FlipNone);
}
}
switch (iRot)
{
case 0:
bmOutput.RotateFlip(RotateFlipType.RotateNoneFlipX);
break;
case 90:
bmOutput.RotateFlip(RotateFlipType.Rotate90FlipX);
break;
case 180:
bmOutput.RotateFlip(RotateFlipType.Rotate180FlipX);
break;
case 270:
bmOutput.RotateFlip(RotateFlipType.Rotate270FlipX);
break;
default:
break;
}
// save new image to response stream
bmOutput.Save(context.Response.OutputStream, ImageFormat.Png);
bmOutput.Dispose();
}