public int StudyType = 0; // Intrinsic or Extrinsic
/// <summary>
/// Create mapping datasets to use in the sas scripts
/// </summary>
/// <param name="noCache"> If true send a timestamp to avoid caching by the server</param>
/// <returns></returns>
public DataSet ToMappingDataSet(bool noCache = false)
{
var data = new DataSet();
// Study information
var studyInfo = new DataTable("study");
studyInfo.Columns.Add("Submission", typeof(string));
studyInfo.Columns.Add("Supplement", typeof(string));
studyInfo.Columns.Add("StudyCode", typeof(string));
studyInfo.Columns.Add("Type", typeof(int));
studyInfo.Columns.Add("Design", typeof(int));
studyInfo.Columns.Add("Cumulative", typeof(int));
studyInfo.Columns.Add("SubjectCTCorrelation", typeof(int));
studyInfo.Columns.Add("ScatterPlot", typeof(int));
studyInfo.Columns.Add("Demographictable", typeof(int));
studyInfo.Columns.Add("UseEx", typeof(int));
studyInfo.Columns.Add("UseSuppdm", typeof(int));
studyInfo.Columns.Add("DisablePcCleanup", typeof(int));
studyInfo.Columns.Add("UseCustomArms", typeof(int));
studyInfo.Columns.Add("UseCustomPcVisit", typeof(int));
studyInfo.Columns.Add("UseCustomPcPctptnum", typeof(int));
studyInfo.Columns.Add("UseCustomPpVisit", typeof(int));
studyInfo.Rows.Add(
this.NDAName,
this.quote(this.SupplementNumber),
this.StudyCode,
this.StudyType,
this.StudyDesign,
this.Cumulative ? 1 : 0,
this.SubjectCTCorrelation ? 1 : 0,
this.ScatterPlot ? 1 : 0,
this.Demographictable ? 1 : 0,
this.UseEx ? 1:0,
this.UseSuppdm ? 1:0,
this.DisablePcCleanup ? 1:0,
this.UseCustomArms ? 1:0,
this.UseCustomPcVisit ? 1:0,
this.UseCustomPcPctptnum ? 1:0,
this.UseCustomPpVisit ? 1:0);
// Study mappings
var studyMapping = new DataTable("mapping");
studyMapping.Columns.Add("StudyCode", typeof(string));
studyMapping.Columns.Add("Domain", typeof(string));
studyMapping.Columns.Add("StdmVar", typeof(string));
studyMapping.Columns.Add("FileVar", typeof(string));
foreach (var domain in this.StudyMappings)
{
// Skip EX if UseEx is not checked
if (!UseEx && domain.Type.ToUpper() == "EX")
{
continue;
}
// Skip Suppdm if Usesuppdm is not checked
if (!UseSuppdm && domain.Type.ToUpper() == "SUPPDM")
{
continue;
}
// Copy each variable mapping to the table
foreach (var mapping in domain.DomainMappings)
{
studyMapping.Rows.Add(
this.StudyCode,
domain.Type,
mapping.SdtmVariable,
mapping.FileVariable);
}
}
// Arm mappings
if (this.UseCustomArms)
{
var armMapping = new DataTable("customDmArms");
armMapping.Columns.Add("OldArm", typeof(string));
armMapping.Columns.Add("NewArm", typeof(string));
if (this.ArmMappings != null)
{
foreach (var arm in this.ArmMappings)
{
armMapping.Rows.Add(arm.OldArm, arm.NewArm);
}
}
data.Tables.Add(armMapping);
}
// PC Visit Mapping
if (this.UseCustomPcVisit)
{
var pcVisitMapping = new DataTable("customPcVisit");
pcVisitMapping.Columns.Add("OldValue", typeof(string));
pcVisitMapping.Columns.Add("NewValue", typeof(string));
if (this.PcVisitMappings != null)
{
foreach (var mapping in this.PcVisitMappings)
{
pcVisitMapping.Rows.Add(mapping.Original, mapping.New);
}
}
data.Tables.Add(pcVisitMapping);
}
// PC Tptnum Mapping
if (this.UseCustomPcPctptnum)
{
var pcTptnumMapping = new DataTable("customPcPctptnum");
pcTptnumMapping.Columns.Add("OldValue", typeof(string));
pcTptnumMapping.Columns.Add("NewValue", typeof(string));
if (this.PcPctptnumMappings != null)
{
foreach (var mapping in this.PcPctptnumMappings)
{
pcTptnumMapping.Rows.Add(mapping.Original, mapping.New);
}
}
data.Tables.Add(pcTptnumMapping);
}
// PP Visit Mapping
if (this.UseCustomPpVisit)
{
var ppVisitMapping = new DataTable("customPpVisit");
ppVisitMapping.Columns.Add("OldValue", typeof(string));
ppVisitMapping.Columns.Add("NewValue", typeof(string));
if (this.PpVisitMappings != null)
{
foreach (var mapping in this.PpVisitMappings)
{
ppVisitMapping.Rows.Add(mapping.Original, mapping.New);
}
}
data.Tables.Add(ppVisitMapping);
}
// Study references
var references = new DataTable("references");
references.Columns.Add("Cohort", typeof(string));
references.Columns.Add("Number", typeof(int));
references.Columns.Add("Reference", typeof(string));
if (this.Cohorts != null)
{
foreach (var cohort in this.Cohorts)
{
references.Rows.Add(
cohort.Name,
cohort.Number,
cohort.Reference);
}
}
// User settings
var userName = HttpContext.Current.User.Identity.Name ?? "DEFAULT";
userName = userName.Substring(userName.LastIndexOfAny(new[] { '/', '\\' }) + 1);
var userConfig = new DataTable("userConfig");
userConfig.Columns.Add("Name", typeof(string));
userConfig.Columns.Add("Value", typeof(string));
userConfig.Rows.Add("ProfileName", this.quote(this.ProfileName));
userConfig.Rows.Add("Username", this.quote(userName));
if (noCache) // If caching is not allowed, send timestamp, otherwise send study settings Hash
{
userConfig.Rows.Add("Timestamp", this.quote(DateTime.Now.Ticks.ToString()));
}
else
{
userConfig.Rows.Add("Hash", this.quote(NDAHash.GetStudyHash(this.NDAName, this.StudyCode).ToString()));
}
data.Tables.Add(studyInfo);
data.Tables.Add(studyMapping);
data.Tables.Add(references);
data.Tables.Add(userConfig);
return(data);
}
/// <summary>
/// Create Variability Meta mapping datasets to use in the sas scripts
/// </summary>
/// <param name="noCache"> If true send a timestamp to avoid caching by the server</param>
/// <returns></returns>
public DataSet ToVariabilityMetaMappingDataSet(bool noCache = false)
{
var data = new DataSet();
// meta analysis format information
var metaVariabilityformat = new DataTable("metaVariabilityformat");
metaVariabilityformat.Columns.Add("PlotType", typeof(String));
metaVariabilityformat.Columns.Add("NormalizedType", typeof(String));
metaVariabilityformat.Columns.Add("upperbound", typeof(float));
metaVariabilityformat.Columns.Add("lowerbound", typeof(float));
metaVariabilityformat.Columns.Add("showdistributionornot", typeof(String));
metaVariabilityformat.Rows.Add(
this.PlotType,
this.NormalizedType,
this.Cutoffupperbound,
this.Cutofflowerbound,
this.showdistributionornot);
// Study information
var studyInfo = new DataTable("study");
for (int i = 1; i <= 1; i++)
{
studyInfo.Columns.Add("Submission", typeof(string));
studyInfo.Columns.Add("Supplement", typeof(string));
studyInfo.Columns.Add("StudyCode", typeof(string));
studyInfo.Columns.Add("Type", typeof(int));
studyInfo.Columns.Add("Design", typeof(int));
studyInfo.Columns.Add("Cumulative", typeof(int));
studyInfo.Columns.Add("SubjectCTCorrelation", typeof(int));
studyInfo.Columns.Add("ScatterPlot", typeof(int));
studyInfo.Columns.Add("Demographictable", typeof(int));
studyInfo.Columns.Add("UseEx", typeof(int));
studyInfo.Columns.Add("UseSuppdm", typeof(int));
studyInfo.Columns.Add("DisablePcCleanup", typeof(int));
studyInfo.Columns.Add("UseCustomArms", typeof(int));
studyInfo.Columns.Add("UseCustomPcVisit", typeof(int));
studyInfo.Columns.Add("UseCustomPcPctptnum", typeof(int));
studyInfo.Columns.Add("UseCustomPpVisit", typeof(int));
studyInfo.Rows.Add(
this.NDAName,
this.quote(this.SupplementNumber),
this.StudyCode,
this.StudyType,
this.StudyDesign,
this.Cumulative ? 1 : 0,
this.SubjectCTCorrelation ? 1 : 0,
this.ScatterPlot ? 1 : 0,
this.Demographictable ? 1 : 0,
this.UseEx ? 1 : 0,
this.UseSuppdm ? 1 : 0,
this.DisablePcCleanup ? 1 : 0,
this.UseCustomArms ? 1 : 0,
this.UseCustomPcVisit ? 1 : 0,
this.UseCustomPcPctptnum ? 1 : 0,
this.UseCustomPpVisit ? 1 : 0);
}
// Study mappings
var studyMapping = new DataTable("mapping");
studyMapping.Columns.Add("StudyCode", typeof(string));
studyMapping.Columns.Add("Domain", typeof(string));
studyMapping.Columns.Add("StdmVar", typeof(string));
studyMapping.Columns.Add("FileVar", typeof(string));
foreach (var domain in this.StudyMappings)
{
// Skip EX if UseEx is not checked
if (!UseEx && domain.Type.ToUpper() == "EX")
{
continue;
}
// Skip Suppdm if Usesuppdm is not checked
if (!UseSuppdm && domain.Type.ToUpper() == "SUPPDM")
{
continue;
}
// Copy each variable mapping to the table
foreach (var mapping in domain.DomainMappings)
{
studyMapping.Rows.Add(
this.StudyCode,
domain.Type,
mapping.SdtmVariable,
mapping.FileVariable);
}
}
// Arm mappings
if (this.UseCustomArms)
{
var armMapping = new DataTable("customDmArms");
armMapping.Columns.Add("OldArm", typeof(string));
armMapping.Columns.Add("NewArm", typeof(string));
armMapping.Columns.Add("StudyCode", typeof(string));
if (this.ArmMappings != null)
{
foreach (var arm in this.ArmMappings)
{
armMapping.Rows.Add(arm.OldArm, arm.NewArm, this.StudyCode);
}
}
data.Tables.Add(armMapping);
}
// PC Visit Mapping
if (this.UseCustomPcVisit)
{
var pcVisitMapping = new DataTable("customPcVisit");
pcVisitMapping.Columns.Add("OldValue", typeof(string));
pcVisitMapping.Columns.Add("NewValue", typeof(string));
pcVisitMapping.Columns.Add("StudyCode", typeof(string));
if (this.PcVisitMappings != null)
{
foreach (var mapping in this.PcVisitMappings)
{
pcVisitMapping.Rows.Add(mapping.Original, mapping.New, this.StudyCode);
}
}
data.Tables.Add(pcVisitMapping);
}
// PC Tptnum Mapping
if (this.UseCustomPcPctptnum)
{
var pcTptnumMapping = new DataTable("customPcPctptnum");
pcTptnumMapping.Columns.Add("OldValue", typeof(string));
pcTptnumMapping.Columns.Add("NewValue", typeof(string));
pcTptnumMapping.Columns.Add("StudyCode", typeof(string));
if (this.PcPctptnumMappings != null)
{
foreach (var mapping in this.PcPctptnumMappings)
{
pcTptnumMapping.Rows.Add(mapping.Original, mapping.New, this.StudyCode);
}
}
data.Tables.Add(pcTptnumMapping);
}
// PP Visit Mapping
if (this.UseCustomPpVisit)
{
var ppVisitMapping = new DataTable("customPpVisit");
ppVisitMapping.Columns.Add("OldValue", typeof(string));
ppVisitMapping.Columns.Add("NewValue", typeof(string));
ppVisitMapping.Columns.Add("StudyCode", typeof(string));
if (this.PpVisitMappings != null)
{
foreach (var mapping in this.PpVisitMappings)
{
ppVisitMapping.Rows.Add(mapping.Original, mapping.New, this.StudyCode);
}
}
data.Tables.Add(ppVisitMapping);
}
// Study references
var references = new DataTable("cohort");
references.Columns.Add("StudyCode", typeof(string));
references.Columns.Add("Number", typeof(int));
references.Columns.Add("Cohort", typeof(string));
if (this.Cohorts != null)
{
foreach (var cohort in this.Cohorts)
{
references.Rows.Add(
this.StudyCode,
cohort.Number,
cohort.Name);
}
}
// Merge with study cohorts list to obtain the cohort number
// Study meta references
var metareferences = new DataTable("trtdose");
metareferences.Columns.Add("StudyCode", typeof(string));
metareferences.Columns.Add("TrtGrp", typeof(string));
metareferences.Columns.Add("Dose", typeof(string));
metareferences.Columns.Add("SelectedCohort", typeof(string));
metareferences.Columns.Add("Number", typeof(int));
if (this.Cohorts != null)
{
for (int i = 0; i < this.Cohorts.Count; i++)
{
var MetaReferences = this.Reports[0].Settings.References[i].MetaCohorts;
var Dose = this.Reports[0].Settings.References[i].Doses;
//var Dose1 = this.Reports[0].Settings.References[i].MetaCohortsAndDoses[0].Dose;
//var Dose555 = this.Doses[i];
foreach (var Reference in MetaReferences)
{
foreach (var Dosevalue in Dose)
{
if (Dosevalue.MetaCohort == Reference)
{
metareferences.Rows.Add(
this.StudyCode,
Dosevalue.MetaCohort,
Dosevalue.value,
this.Cohorts[i].Name,
this.Cohorts[i].Number
);
}
}
}
}
}
// User settings
var userName = HttpContext.Current.User.Identity.Name ?? "DEFAULT";
userName = userName.Substring(userName.LastIndexOfAny(new[] { '/', '\\' }) + 1);
var userConfig = new DataTable("userConfig");
userConfig.Columns.Add("Name", typeof(string));
userConfig.Columns.Add("Value", typeof(string));
userConfig.Columns.Add("StudyCode", typeof(string));
userConfig.Rows.Add("ProfileName", this.quote(this.ProfileName), this.StudyCode);
userConfig.Rows.Add("Username", this.quote(userName), this.StudyCode);
if (noCache) // If caching is not allowed, send timestamp, otherwise send study settings Hash
{
userConfig.Rows.Add("Timestamp", this.quote(DateTime.Now.Ticks.ToString()), this.StudyCode);
}
else
{
userConfig.Rows.Add("Hash", this.quote(NDAHash.GetStudyHash(this.NDAName, this.StudyCode).ToString()), this.StudyCode);
}
data.Tables.Add(studyInfo);
data.Tables.Add(studyMapping);
data.Tables.Add(references);
data.Tables.Add(metareferences);
data.Tables.Add(userConfig);
data.Tables.Add(metaVariabilityformat);
return(data);
}