private void OnOpenDICOMDatasetResult(RuntimeFileBrowser.DialogResult result)
{
if (!result.cancelled)
{
// We'll only allow one dataset at a time in the runtime GUI (for simplicity)
DespawnAllDatasets();
bool recursive = true;
// Read all files
IEnumerable <string> fileCandidates = Directory.EnumerateFiles(result.path, "*.*", recursive ? SearchOption.AllDirectories : SearchOption.TopDirectoryOnly)
.Where(p => p.EndsWith(".dcm", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicom", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicm", StringComparison.InvariantCultureIgnoreCase));
// Import the dataset
DICOMImporter importer = new DICOMImporter(fileCandidates, Path.GetFileName(result.path));
List <DICOMImporter.DICOMSeries> seriesList = importer.LoadDICOMSeries();
float numVolumesCreated = 0;
foreach (DICOMImporter.DICOMSeries series in seriesList)
{
VolumeDataset dataset = importer.ImportDICOMSeries(series);
// Spawn the object
if (dataset != null)
{
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
obj.transform.position = new Vector3(numVolumesCreated, 0, 0);
numVolumesCreated++;
}
}
}
}
static void ShowSequenceImporter()
{
string dir = EditorUtility.OpenFolderPanel("Select a folder to load", "", "");
if (Directory.Exists(dir))
{
ImageSequenceImporter importer = new ImageSequenceImporter(dir);
VolumeDataset dataset = importer.Import();
if (dataset != null)
{
if (EditorPrefs.GetBool("DownscaleDatasetPrompt"))
{
if (EditorUtility.DisplayDialog("Optional DownScaling",
$"Do you want to downscale the dataset? The dataset's dimension is: {dataset.dimX} x {dataset.dimY} x {dataset.dimZ}", "Yes", "No"))
{
dataset.DownScaleData();
}
}
VolumeObjectFactory.CreateObject(dataset);
}
}
else
{
Debug.LogError("Directory doesn't exist: " + dir);
}
}
private void OnOpenRAWDatasetResult(RuntimeFileBrowser.DialogResult result)
{
if (!result.cancelled)
{
// We'll only allow one dataset at a time in the runtime GUI (for simplicity)
DespawnAllDatasets();
// Did the user try to import an .ini-file? Open the corresponding .raw file instead
string filePath = result.path;
if (System.IO.Path.GetExtension(filePath) == ".ini")
{
filePath = filePath.Replace(".ini", ".raw");
}
// Parse .ini file
DatasetIniData initData = DatasetIniReader.ParseIniFile(filePath + ".ini");
if (initData != null)
{
// Import the dataset
RawDatasetImporter importer = new RawDatasetImporter(filePath, initData.dimX, initData.dimY, initData.dimZ, initData.format, initData.endianness, initData.bytesToSkip);
VolumeDataset dataset = importer.Import();
// Spawn the object
if (dataset != null)
{
VolumeObjectFactory.CreateObject(dataset);
}
}
}
}
public static void ImportDataset(string filePath)
{
DatasetType datasetType = DatasetImporterUtility.GetDatasetType(filePath);
switch (datasetType)
{
case DatasetType.Raw:
{
RAWDatasetImporterEditorWindow wnd = (RAWDatasetImporterEditorWindow)EditorWindow.GetWindow(typeof(RAWDatasetImporterEditorWindow));
if (wnd != null)
{
wnd.Close();
}
wnd = new RAWDatasetImporterEditorWindow(filePath);
wnd.Show();
break;
}
case DatasetType.DICOM:
{
DatasetImporterBase importer = new DICOMImporter(new FileInfo(filePath).Directory.FullName, false);
VolumeDataset dataset = importer.Import();
if (dataset != null)
{
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
}
break;
}
}
}
static void ShowDICOMImporter()
{
string dir = EditorUtility.OpenFolderPanel("Select a folder to load", "", "");
if (Directory.Exists(dir))
{
bool recursive = true;
// Read all files
IEnumerable <string> fileCandidates = Directory.EnumerateFiles(dir, "*.*", recursive ? SearchOption.AllDirectories : SearchOption.TopDirectoryOnly)
.Where(p => p.EndsWith(".dcm", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicom", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicm", StringComparison.InvariantCultureIgnoreCase));
if (!fileCandidates.Any())
{
#if UNITY_EDITOR
if (UnityEditor.EditorUtility.DisplayDialog("Could not find any DICOM files",
$"Failed to find any files with DICOM file extension.{Environment.NewLine}Do you want to include files without DICOM file extension?", "Yes", "No"))
{
fileCandidates = Directory.EnumerateFiles(dir, "*.*", recursive ? SearchOption.AllDirectories : SearchOption.TopDirectoryOnly);
}
#endif
}
if (fileCandidates.Any())
{
DICOMImporter importer = new DICOMImporter(fileCandidates, Path.GetFileName(dir));
List <DICOMImporter.DICOMSeries> seriesList = importer.LoadDICOMSeries();
float numVolumesCreated = 0;
foreach (DICOMImporter.DICOMSeries series in seriesList)
{
VolumeDataset dataset = importer.ImportDICOMSeries(series);
if (dataset != null)
{
if (EditorPrefs.GetBool("DownscaleDatasetPrompt"))
{
if (EditorUtility.DisplayDialog("Optional DownScaling",
$"Do you want to downscale the dataset? The dataset's dimension is: {dataset.dimX} x {dataset.dimY} x {dataset.dimZ}", "Yes", "No"))
{
dataset.DownScaleData();
}
}
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
obj.transform.position = new Vector3(numVolumesCreated, 0, 0);
numVolumesCreated++;
}
}
}
else
{
Debug.LogError("Could not find any DICOM files to import.");
}
}
else
{
Debug.LogError("Directory doesn't exist: " + dir);
}
}
static void SpawnCutoutBox()
{
VolumeRenderedObject[] objects = GameObject.FindObjectsOfType <VolumeRenderedObject>();
if (objects.Length == 1)
{
VolumeObjectFactory.SpawnCutoutBox(objects[0]);
}
}
static void OnMenuItemClick()
{
VolumeRenderedObject[] objects = GameObject.FindObjectsOfType <VolumeRenderedObject>();
if (objects.Length == 1)
{
VolumeObjectFactory.SpawnCrossSectionPlane(objects[0]);
}
else
{
CrossSectionPlaneEditorWindow wnd = new CrossSectionPlaneEditorWindow();
wnd.Show();
}
}
private void OnOpenPARDatasetResult(RuntimeFileBrowser.DialogResult result)
{
if (!result.cancelled)
{
DespawnAllDatasets();
string filePath = result.path;
ParDatasetImporter parimporter = new ParDatasetImporter(filePath);
VolumeDataset dataset = parimporter.Import(); //overriden somewhere
if (dataset != null)
{
VolumeObjectFactory.CreateObject(dataset);
}
}
}
private void OnOpenDICOMDatasetResult(RuntimeFileBrowser.DialogResult result)
{
if (!result.cancelled)
{
// We'll only allow one dataset at a time in the runtime GUI (for simplicity)
DespawnAllDatasets();
// Import the dataset
DICOMImporter importer = new DICOMImporter(result.path, true);
VolumeDataset dataset = importer.Import();
// Spawn the object
if (dataset != null)
{
VolumeObjectFactory.CreateObject(dataset);
}
}
}
private void ImportDataset()
{
DatasetImporterBase importer = new RawDatasetImporter(fileToImport, dimX, dimY, dimZ, dataFormat, endianness, bytesToSkip);
VolumeDataset dataset = importer.Import();
if (dataset != null)
{
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
}
else
{
Debug.LogError("Failed to import datset");
}
this.Close();
}
private void OnGUI()
{
VolumeRenderedObject[] spawnedObjects = GameObject.FindObjectsOfType <VolumeRenderedObject>();
if (spawnedObjects.Length == 0)
{
EditorGUILayout.LabelField("Please load a dataset first.");
}
else
{
foreach (VolumeRenderedObject volobj in spawnedObjects)
{
if (GUILayout.Button(volobj.gameObject.name))
{
VolumeObjectFactory.SpawnCrossSectionPlane(volobj);
}
}
}
}
static void ShowDICOMImporter()
{
string dir = EditorUtility.OpenFolderPanel("Select a folder to load", "", "");
if (Directory.Exists(dir))
{
DICOMImporter importer = new DICOMImporter(dir, true);
VolumeDataset dataset = importer.Import();
if (dataset != null)
{
VolumeObjectFactory.CreateObject(dataset);
}
}
else
{
Debug.LogError("Directory doesn't exist: " + dir);
}
}
static void ShowDICOMImporter()
{
string dir = EditorUtility.OpenFolderPanel("Select a folder to load", "", "");
if (Directory.Exists(dir))
{
bool recursive = true;
// Read all files
IEnumerable <string> fileCandidates = Directory.EnumerateFiles(dir, "*.*", recursive ? SearchOption.AllDirectories : SearchOption.TopDirectoryOnly)
.Where(p => p.EndsWith(".dcm", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicom", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicm", StringComparison.InvariantCultureIgnoreCase));
if (!fileCandidates.Any())
{
#if UNITY_EDITOR
if (UnityEditor.EditorUtility.DisplayDialog("Could not find any DICOM files",
$"Failed to find any files with DICOM file extension.{Environment.NewLine}Do you want to include files without DICOM file extension?", "Yes", "No"))
{
fileCandidates = Directory.EnumerateFiles(dir, "*.*", recursive ? SearchOption.AllDirectories : SearchOption.TopDirectoryOnly);
}
#endif
}
if (fileCandidates.Any())
{
DICOMImporter importer = new DICOMImporter(fileCandidates, Path.GetFileName(dir));
VolumeDataset dataset = importer.Import();
if (dataset != null)
{
VolumeObjectFactory.CreateObject(dataset);
}
}
else
{
Debug.LogError("Could not find any DICOM files to import.");
}
}
else
{
Debug.LogError("Directory doesn't exist: " + dir);
}
}
public static void ImportDataset(string filePath)
{
DatasetType datasetType = DatasetImporterUtility.GetDatasetType(filePath);
switch (datasetType)
{
case DatasetType.Raw:
{
RAWDatasetImporterEditorWindow wnd = (RAWDatasetImporterEditorWindow)EditorWindow.GetWindow(typeof(RAWDatasetImporterEditorWindow));
if (wnd != null)
{
wnd.Close();
}
wnd = new RAWDatasetImporterEditorWindow(filePath);
wnd.Show();
break;
}
case DatasetType.DICOM:
{
string directoryPath = new FileInfo(filePath).Directory.FullName;
// Find all DICOM files in directory
IEnumerable <string> fileCandidates = Directory.EnumerateFiles(directoryPath, "*.*", SearchOption.TopDirectoryOnly)
.Where(p => p.EndsWith(".dcm", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicom", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicm", StringComparison.InvariantCultureIgnoreCase));
DatasetImporterBase importer = new DICOMImporter(fileCandidates, Path.GetFileName(directoryPath));
VolumeDataset dataset = importer.Import();
if (dataset != null)
{
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
}
break;
}
}
}
private void OnOpenDICOMDatasetResult(RuntimeFileBrowser.DialogResult result)
{
if (!result.cancelled)
{
// We'll only allow one dataset at a time in the runtime GUI (for simplicity)
DespawnAllDatasets();
bool recursive = true;
// Read all files
IEnumerable <string> fileCandidates = Directory.EnumerateFiles(result.path, "*.*", recursive ? SearchOption.AllDirectories : SearchOption.TopDirectoryOnly)
.Where(p => p.EndsWith(".dcm", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicom", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicm", StringComparison.InvariantCultureIgnoreCase));
// Import the dataset
DICOMImporter importer = new DICOMImporter(fileCandidates, Path.GetFileName(result.path));
VolumeDataset dataset = importer.Import();
// Spawn the object
if (dataset != null)
{
VolumeObjectFactory.CreateObject(dataset);
}
}
}
private void ImportDataset()
{
DatasetImporterBase importer = null;
switch (datasetType)
{
case DatasetType.Raw:
{
importer = new RawDatasetImporter(fileToImport, dimX, dimY, dimZ, dataFormat, bytesToSkip);
break;
}
case DatasetType.DICOM:
{
importer = new DICOMImporter(new FileInfo(fileToImport).Directory.FullName, false);
break;
}
}
VolumeDataset dataset = null;
if (importer != null)
{
dataset = importer.Import();
}
if (dataset != null)
{
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
}
else
{
Debug.LogError("Failed to import datset");
}
this.Close();
}
private void ImportDataset()
{
RawDatasetImporter importer = new RawDatasetImporter(fileToImport, dimX, dimY, dimZ, dataFormat, endianness, bytesToSkip);
VolumeDataset dataset = importer.Import();
if (dataset != null)
{
if (EditorPrefs.GetBool("DownscaleDatasetPrompt"))
{
if (EditorUtility.DisplayDialog("Optional DownScaling",
$"Do you want to downscale the dataset? The dataset's dimension is: {dataset.dimX} x {dataset.dimY} x {dataset.dimZ}", "Yes", "No"))
{
dataset.DownScaleData();
}
}
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
}
else
{
Debug.LogError("Failed to import datset");
}
this.Close();
}
private void ImportDataset()
{
DatasetImporterBase importer = null;
switch (datasetType)
{
case DatasetType.Raw:
{
importer = new RawDatasetImporter(fileToImport, dimX, dimY, dimZ, dataFormat, bytesToSkip);
break;
}
case DatasetType.DICOM:
{
throw new System.NotImplementedException("TODO: implement support for DICOM files");
}
}
VolumeDataset dataset = null;
if (importer != null)
{
dataset = importer.Import();
}
if (dataset != null)
{
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
}
else
{
Debug.LogError("Failed to import datset");
}
this.Close();
}
public static void ImportDataset(string filePath)
{
DatasetType datasetType = DatasetImporterUtility.GetDatasetType(filePath);
switch (datasetType)
{
case DatasetType.Raw:
{
RAWDatasetImporterEditorWindow wnd = (RAWDatasetImporterEditorWindow)EditorWindow.GetWindow(typeof(RAWDatasetImporterEditorWindow));
if (wnd != null)
{
wnd.Close();
}
wnd = new RAWDatasetImporterEditorWindow(filePath);
wnd.Show();
break;
}
case DatasetType.DICOM:
{
string directoryPath = new FileInfo(filePath).Directory.FullName;
// Find all DICOM files in directory
IEnumerable <string> fileCandidates = Directory.EnumerateFiles(directoryPath, "*.*", SearchOption.TopDirectoryOnly)
.Where(p => p.EndsWith(".dcm", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicom", StringComparison.InvariantCultureIgnoreCase) || p.EndsWith(".dicm", StringComparison.InvariantCultureIgnoreCase));
DICOMImporter importer = new DICOMImporter(fileCandidates, Path.GetFileName(directoryPath));
List <DICOMImporter.DICOMSeries> seriesList = importer.LoadDICOMSeries();
foreach (DICOMImporter.DICOMSeries series in seriesList)
{
// Only import the series that contains the selected file
if (series.dicomFiles.Any(f => Path.GetFileName(f.filePath) == Path.GetFileName(filePath)))
{
VolumeDataset dataset = importer.ImportDICOMSeries(series);
if (dataset != null)
{
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
}
}
}
break;
}
case DatasetType.PARCHG:
{
ParDatasetImporter importer = new ParDatasetImporter(filePath);
VolumeDataset dataset = importer.Import();
if (dataset != null)
{
VolumeRenderedObject obj = VolumeObjectFactory.CreateObject(dataset);
}
else
{
Debug.LogError("Failed to import datset");
}
break;
}
}
}