/// <summary>
/// Default constructor
/// </summary>
public Stochfit(string[] args)
{
InitializeComponent();
//Set properties that persist
Properties.Settings.Default.UseSLDSingleSession = UseSLDToolStripMenuItem.Checked = Properties.Settings.Default.UseSLD;
forceRQ4GraphingToolStripMenuItem.Checked = Properties.Settings.Default.ForceRQ4;
SaveReminderCTB.Checked = Properties.Settings.Default.DisableSavePrompt;
InfoStruct = new ModelSettings();
//Object for thread synchronization
lockobj = new Object();
//Class instances that make controlling the graph easier
reflgraphobject = new Graphing(string.Empty);
rhographobject = new Graphing(string.Empty);
modelreflname = "Model Independent Reflectivity";
rhomodelname = "rhomodel";
FileNameTB.ReadOnly = true;
//Set default values here for internationalization reasons
Rholipid.Text = (9.38).ToString();
SubSLDTB.Text = (9.38).ToString();
SurfAbs.Text = ((double)1.0e-14).ToString();
SubAbs.Text = ((double)2.0e-8).ToString();
layerlength.Text = ((double)25.0).ToString();
SupSLDTB.Text = ((double)0).ToString();
wavelength.Text = (1.24).ToString();
SupAbsTB.Text = ((double)0).ToString();
QErrTB.Text = ((double)0).ToString();
ParamTempTB.Text = (0.03).ToString();
ImpNormCB_CheckedChanged(null, null);
UseAbsCB_CheckedChanged(null, null);
//Setup the graphs
reflgraphobject.CreateGraph(ReflGraph, "Model Independent Reflectivity Fit", "Q", "Intensity", AxisType.Log);
rhographobject.CreateGraph(RhoGraph, "Model Independent Electron Density Fit", "Z",
"Normalized Electron Density", AxisType.Linear);
if (args.Length > 0)
{
m_bloadfromcommandline = true;
origreflfilename = args[0];
LoadDataFile(args[0]);
IterationsTB.Text = args[1];
}
}
private void AddGraph(Graphing graphobject, Document document, PdfWriter writer)
{
PdfContentByte cb = writer.DirectContent;
//Can't use transparency in graph object, so create a temp object and fix it
Graphing tempgraph = new Graphing(string.Empty);
tempgraph.DeepCopy(graphobject);
tempgraph.PaneFill = System.Drawing.Color.White;
tempgraph.ChartFill = System.Drawing.Color.White;
tempgraph.Pane.Title.IsVisible = true;
tempgraph.Pane.Legend.IsVisible = false;
//Add the image
iTextSharp.text.Image image = iTextSharp.text.Image.GetInstance(tempgraph.GetImage(), ImageFormat.Bmp);
image.ScalePercent(65);
document.Add(image);
}
/// <summary>
/// Graphs and fits an Electron Density Profile against a user defined Electron Density Profile
/// </summary>
/// <param name="Z">Array of thickness data points</param>
/// <param name="ERho">Electron density of the profile to be fit</param>
/// <param name="roughness">The overall smoothing parameter found by the model independent fit</param>
/// <param name="SupOffset">The offset in Z for the first box</param>
/// <param name="subsld">The subphase SLD</param>
/// <param name="supsld">The superphase SLD</param>
public Rhomodeling(double[] Z, double[] ERho, double roughness, string SupOffset, string subsld, string supsld)
{
InitializeComponent();
RhoCalc = new RhoFit(Z, ERho);
BoxSigmaArray = new List <TextBox>(6);
BoxLengthArray = new List <TextBox>(6);
BoxRhoArray = new List <TextBox>(6);
this.Text = "Profile Modeling";
//Setup variables
if (roughness == 0)
{
roughness = 3.0;
}
RhoCalc.GetSubRoughness = roughness;
SubRough.Text = roughness.ToString();
Zoffset.Text = SupOffset.ToString();
SubphaseSLD.Text = subsld;
SupSLDTB.Text = supsld;
//Set default array values
if (Properties.Settings.Default.UseSLDSingleSession == false)
{
Rho2.Text = Rho1.Text = (1.1).ToString();
}
else
{
Rho2.Text = Rho1.Text = (1.3 * double.Parse(subsld)).ToString();
}
Sigma2.Text = Sigma1.Text = (3.25).ToString();
LLength1.Text = LLength2.Text = (15.1).ToString();
//Initialize the arrays
MakeArrays();
if (Z == null)
{
Report_btn.Enabled = UndoFit.Enabled = LevenbergFit.Enabled = false;
}
//Setup the Graph
m_gRhoGraphing = new Graphing(string.Empty);
m_gRhoGraphing.SubSLD = double.Parse(subsld);
m_gRhoGraphing.UseSLD = Properties.Settings.Default.UseSLDSingleSession;
if (Properties.Settings.Default.UseSLDSingleSession == false)
{
m_gRhoGraphing.CreateGraph(RhoGraph, "Electron Density Profile", "Z", "Normalized Electron Density", AxisType.Linear);
RhoLabel.Text = "Normalized Rho";
}
else
{
m_gRhoGraphing.CreateGraph(RhoGraph, "SLD Profile", "Z", "SLD", AxisType.Linear);
RhoLabel.Text = "SLD";
}
m_gRhoGraphing.SetGraphType(false, false);
if (Z != null)
{
m_gRhoGraphing.LoadfromArray("Model Independent Fit", Z, ERho, System.Drawing.Color.Black, SymbolType.None, 0, true, string.Empty);
}
ChangeRoughnessArray();
GreyFields();
//Subscribe to the event that notifies us to update the frontend
RhoCalc.Update += new BoxReflFitBase.UpdateProfileHandler(UpdateProfile);
//Create the electron density graph
MakeED();
}
public ConstrainedReflmodeling(RhoFit RhoCalc)
{
InitializeComponent();
ReflCalc = new ReflFit(RhoCalc as BoxReflFitBase);
m_bUseSLD = Properties.Settings.Default.UseSLDSingleSession;
SigmaArray = new List <TextBox>(6);
LengthArray = new List <TextBox>(6);
RhoArray = new List <TextBox>(6);
HoldSigmaArray = new List <CheckBox>(6);
HoldLengthArray = new List <CheckBox>(6);
HoldRhoArray = new List <CheckBox>(6);
if (m_bUseSLD)
{
tabControl1.TabPages[1].Text = "SLD";
RhoLabel.Text = "SLD";
}
else
{
tabControl1.TabPages[1].Text = "Electron Density";
}
WavelengthTB.Text = ((double)(1.24)).ToString();
//Initialize the arrays
MakeArrays();
//Copy over the values
BoxCount.Text = RhoCalc.BoxCount.ToString();
SubRough.Text = RhoCalc.GetSubRoughness.ToString();
SubphaseSLD.Text = RhoCalc.SubphaseSLD.ToString();
SupSLDTB.Text = RhoCalc.SuperphaseSLD.ToString();
Holdsigma.Checked = RhoCalc.IsOneSigma;
//Setup the Graph
ReflGraphing = new Graphing(string.Empty);
ReflGraphing.SetGraphType(Properties.Settings.Default.ForceRQ4, DBFCB.Checked);
ReflGraphing.SubSLD = SubphaseSLD.ToDouble();
ReflGraphing.SupSLD = SupSLDTB.ToDouble();
ReflGraphing.CreateGraph(RhoGraph, "Reflectivity", "Q/Qc", "Intensity / Fresnel", AxisType.Log);
ReflGraphing.LoadDatawithErrorstoGraph("Reflectivity Data", System.Drawing.Color.Black, SymbolType.Circle, 5, ReflData.Instance.GetQData, ReflData.Instance.GetReflData);
//Set up ED Graph
RhoGraphing = new Graphing(string.Empty);
RhoGraphing.SubSLD = SubphaseSLD.ToDouble();
RhoGraphing.UseSLD = m_bUseSLD;
RhoGraphing.SetGraphType(false, false);
if (m_bUseSLD == false)
{
RhoGraphing.CreateGraph(EDzedGraphControl1, "Electron Density Profile", "Z", "Normalized Electron Density", AxisType.Linear);
}
else
{
RhoGraphing.CreateGraph(EDzedGraphControl1, "SLD Profile", "Z", "SLD", AxisType.Linear);
}
RhoGraphing.Pane.XAxis.Scale.Min = 0;
RhoGraphing.Pane.XAxis.Scale.Max = ReflCalc.Z[ReflCalc.Z.Length - 1];
loadingCircle2.Visible = loadingCircle1.Visible = false;
loadingCircle2.NumberSpoke = loadingCircle1.NumberSpoke = 25;
loadingCircle2.InnerCircleRadius = loadingCircle1.InnerCircleRadius = 60;
loadingCircle2.OuterCircleRadius = loadingCircle1.OuterCircleRadius = 120;
loadingCircle2.RotationSpeed = loadingCircle1.RotationSpeed = 150;
loadingCircle2.SpokeThickness = loadingCircle1.SpokeThickness = 3;
//Initialize constrain form
ConstrForm = new Constraints(6);
GreyFields();
//Setup the callback if the graph updates the bounds
ReflGraphing.ChangedBounds += new Graphing.ChangedEventHandler(PointChanged);
//Setup the callback to update the frontend with new information
ReflCalc.Update += new BoxReflFitBase.UpdateProfileHandler(ReflCalc_Update);
ReflCalc_Update(null, null);
MakeReflectivity();
}